Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq40448 279 1e-72 seq40447 255 1e-65 seq29733 199 1e-48 seq255881 192 1e-46 seq64689 165 2e-38 seq41844 82.4 2e-13 seq41820 80.6 7e-13 seq123 80.6 7e-13 >seq40448 Length=2356 Score = 279 bits (308), Expect = 1e-72 Identities = 306/411 (74%), Gaps = 40/411 (10%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 1179 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 1235 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 1236 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTACCAGC 1291 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| |||||||| | ||||||||||| Sbjct 1292 AACTAAACGCCCTATTCAGACTCGCTTTNNNNNNNNNNNNNNNN---------------- 1335 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 |||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1336 --------------TCGCTGACCCATTATACAAAAGGTACGCCGTCACCCAACAA--TGG 1379 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 ||||| |||||||||| |||| |||||||||| ||| ||||||||||||| |||||| | Sbjct 1380 GCTCCGACTGCTTGTAAGCATCCGGTTTCAGG-TCTCTTTCACTCCCCTCGTCGGGGTGC 1438 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| |||||||||||||||||| ||||||||||||||| | ||||||||| |||| Sbjct 1439 TTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGGCTTG 1498 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| ||||||||||| |||||||| ||||| ||||| ||| | ||||| Sbjct 1499 GAGGGTGGTCCCCCCACGTTCAGACAGGGTTTCACGTGCCCCGCCTTACTC 1549 >seq40447 Length=4142 Score = 255 bits (282), Expect = 1e-65 Identities = 307/413 (74%), Gaps = 37/413 (9%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||| |||||||| ||||| || ||||||||| |||||||| | ||| Sbjct 2420 CCACAAGTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCAT-GTT 2476 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || ||||| || |||| ||| | ||||||||| ||| Sbjct 2477 ACTGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGT-------------------- 2514 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 |||||| | ||||||||||| |||| ||||| | ||||| | |||||||| Sbjct 2515 --------GCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTATCGGCTTAAGCTT- 2564 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 || | | |||||| | |||||||||| ||| |||||||| |||| | | ||| | Sbjct 2565 GCTTGATACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTGTCAGGCCATAAAA-G 2623 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 |||| |||||||||| ||| | |||||||| || ||||||||||||| |||||| Sbjct 2624 CCCTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTG 2683 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| ||||||||||||||||||||||| ||||||||| | | ||||||||| ||| Sbjct 2684 CTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCGCTGACGAGTATTTAGGCTT 2743 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| |||||||||||| |||||||| | |||| |||| |||| |||||||| Sbjct 2744 GGAGGGTGGTCCCCCCATGTTCAGACAGAATTTCACGTGTTCCGCCCTACTCG 2796 >seq29733 Length=2375 Score = 199 bits (220), Expect = 1e-48 Identities = 306/422 (73%), Gaps = 21/422 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || || | |||||||| | ||| ||||||| |||||| | || || Sbjct 1440 CCACAGCTCATCCC-CTC-CATTTTCAACTGAAGTGGGTTCGGGCCTCCACGTCGTC-TT 1384 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| || |||| |||| || |||||| | | | || |||||||| | | || Sbjct 1383 ACCGACGCTT-CACCCTGGCCATGGG-TAGATCACTCCGCTT-CGGGTCTAGAACAC-GC 1328 Query 129 GACTAGAC-GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187 ||| || ||||| | ||||||||||| ||||||| || ||| | ||| | | | | Sbjct 1327 CACTGAACCGCCCTGTTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTC 1269 Query 188 GCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA---- 242 ||||| | | ||| |||| | | |||| | ||||||| |||| ||||||| || Sbjct 1268 GCCACGTACCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCACCCACCACCAC 1209 Query 243 AAGTG------GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 ||| | ||||| || | ||||| || ||||||||||| |||||||||||||| Sbjct 1208 AAGGGTGCACAGGCTCTGACGGATTGTAGGCGCACGGTTTCAGGTACTATTTCACTCCCC 1149 Query 297 TCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAG 356 || ||||||| |||||| ||||||||||||||||||||| | |||||||||| | || Sbjct 1148 TC-CCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAG 1090 Query 357 TATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416 |||| || ||| || ||||||| || ||||| | | |||| || || | | ||| Sbjct 1089 TATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGATTTCACGGGCCCGCTGCTA 1030 Query 417 CT 418 || Sbjct 1029 CT 1028 >seq255881 Length=344 Score = 192 bits (212), Expect = 1e-46 Identities = 262/358 (73%), Gaps = 32/358 (9%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 327 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 271 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| |||||||||||| || |||||| | ||||| || ||||| | || | Sbjct 270 ACCAAAGCTT-CAACCTGCCCATGGG-TAGATCACAAGGTTT-CGCGTCTAAT-CCTACT 215 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| |||||| | ||||||||||| | | ||| || Sbjct 214 AACTAATAGCCCTATTCAGACTCGCTTT---------CGCACCT--------------TG 178 Query 189 CCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||| | || | ||| ||| | | |||||| ||||||| |||| ||||| |||| ||| Sbjct 177 CCAGTAAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACTCAACTT-GTG 119 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||| || ||||||| || |||||||||||| ||| |||||| | || | || || Sbjct 118 AGCTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTTTTTCACCCTTCTATTCGAAGTG 59 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||| ||||||| |||| ||||| |||||||||||||| |||| ||||||||||| Sbjct 58 CTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGCC 1 >seq64689 Length=1551 Score = 165 bits (182), Expect = 2e-38 Identities = 163/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 212 CATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTGGGCTCCCACTGCTTGTACGCATA 270 |||| | ||||||| |||| ||||||| |||| | |||||| || | ||||| ||| | Sbjct 1547 CATTCTTCAAAAGGCACGCCGTCACCCCTACAAGGGAGGCTCCAACGGTTTGTAAGCAGA 1488 Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 1487 CGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCACCTTTCCCTCACGGTA 1429 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 || || | |||||||||| | ||||||||| ||| | |||||| || ||||| Sbjct 1428 CTTGTCCGCTATCGGTCATCTGGGAGTATTTAGGCTTACCAGGTGGTCCTGGCAGATTCA 1369 Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACT 418 || ||||||| || |||| ||||| Sbjct 1368 CACGGGATTTCTCGGGCCCCGTGCTACT 1341 >seq41844 Length=219 Score = 82.4 bits (90), Expect = 2e-13 Identities = 133/180 (74%), Gaps = 10/180 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | | |||||||| | || |||||||||||||| || || Sbjct 202 CCACAGCTCATCCCCC--AGGTTTTCAACCCTGGTGGGTTCGGTCCTCCACGCGGT-CTT 146 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| | |||||||||||||| ||||||||| | | ||||||||| || | || Sbjct 145 ACCC-GCGCTTCAACCTGCCCAT-GGATAGATCACTTCG-CTTCGGGTCTTGATCGC-GC 90 Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTC-GGTTAAGCTT 186 ||| || ||||||| | ||||||| |||||||||| || ||| | | |||||| ||| Sbjct 89 CACTCAGTCGCCCTATTCGGACTCGC-TTTCGCTACGGCTTCCCCACACGGGTTAACCTT 31 >seq41820 Length=210 Score = 80.6 bits (88), Expect = 7e-13 Identities = 139/190 (73%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||||||| | ||| |||||||||||||| | Sbjct 209 CCTATCCACAGCTCATCCC-CTC-CATTTTCAACTGAAGTGGGTTCGGTCCTCCACGACG 152 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||| || | ||||||||| |||| ||||||||| | | |||||||||| Sbjct 151 T-CTTA-CCGTCGCTTCAACCTGGCCAT-GGATAGATCACTTCG-CTTCGGGTCTA-GGA 97 Query 124 CCAGCGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 | |||||| | ||||||| | |||||||| |||||||||| || ||| | ||| | | Sbjct 96 CATGCGACTGAATCGCCCTATTCAGACTCGC-TTTCGCTACGGCTGCCCCACACGGGTTA 38 Query 183 GCTTTGCCAC 192 | | ||||| Sbjct 37 ACCTCGCCAC 28 >seq123 Length=7390 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 2455 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 2513 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| | ||| ||||||||||| || Sbjct 2514 ACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTAGA 2554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1238159737472