Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq17638 235 6e-60 seq250703 201 1e-49 seq3178 201 1e-49 seq123 98.7 1e-18 >seq17638 Length=4506 Score = 235 bits (260), Expect = 6e-60 Identities = 167/190 (88%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||| Sbjct 156 GGAACCAGGGATTTTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGTATTTGCCTGAATA 215 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 216 CATTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG- 274 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| | ||||| || |||| ||||||||||| Sbjct 275 CCGTAATGATTAATAGGGATAGTCGGGGGCATTTGTATTACATCGTCAGAGGTGAAATTC 334 Query 181 TTGGATTTAT 190 ||||||| || Sbjct 335 TTGGATTGAT 344 >seq250703 Length=390 Score = 201 bits (222), Expect = 1e-49 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||||||| ||| ||||||||| |||| ||||| Sbjct 126 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCAGGCGTTTCGCTCGAATATATTAGCATGG 185 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||||||||||||||| ||||||||||||| ||||||||| || | |||||||||| Sbjct 186 AATAATAGAATAGGACGTATGGTTCTATTTTGTTGGTTTCTAGAACTG-TCGTAATGATA 244 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||| | | ||||||||||| |||||||||||| | |||||||||||| Sbjct 245 AATAGGAACAGTCGGGGGTGGAGGTATTCAATTGTTAGAGGTGAAATTCT 294 >seq3178 Length=420 Score = 201 bits (222), Expect = 1e-49 Identities = 159/188 (85%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAAT 59 |||||||||||| |||||||||||||||||||| |||||||||||||| | | | ||||| Sbjct 308 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 249 Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 | |||| |||||||||| ||||||||||||||||||||||||||| ||||||||| || | Sbjct 248 ATATTAGCATGGAATAACAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAACTG 189 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||||| || | ||| || |||||| | |||||| | | |||||||||| Sbjct 188 -CCGTAATGATTAAAAGGGACAGCCGGGGGCATTAGTATTTGCACGCTAGAGGTGAAATT 130 Query 180 CTTGGATT 187 |||||||| Sbjct 129 CTTGGATT 122 >seq123 Length=7390 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 13/185 (7%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 5569 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 5512 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 5511 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 5453 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||||| ||||| | ||||| || | |||||||||||| Sbjct 5452 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 5393 Query 182 TGGAT 186 ||||| Sbjct 5392 TGGAT 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510625668320