Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11296 657 0.0 seq123 414 3e-113 seq11297 389 1e-105 seq158868 340 5e-91 >seq11296 Length=1858 Score = 657 bits (728), Expect = 0.0 Identities = 449/504 (89%), Gaps = 15/504 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||| |||||| || |||||||||||||||||| Sbjct 470 GTACTCATTCCAATTACAAGACCCAAAAAGGCCCTGCATTGTTATTTATTGTCACTACCT 529 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| Sbjct 530 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATCTGAGGGCCGTT 589 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||| Sbjct 590 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCGTCACCATGGTA 649 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| || Sbjct 650 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCAGCA 709 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||| || ||||||| |||||| |||| ||||||| ||| ||||| | | ||||| Sbjct 710 CAAGGCTATACGATTCGAGCAGTTATCATGATTCACCAAAGAG-ACCGAA-GCCATTGGT 767 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 827 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 828 AATTACCACAGTTATCCATGTAGTAAGGTACTATCAAATAAACTATAACTGATTTAATGA 887 Query 421 GCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| ||||| | ||| ||||||||||||||||| | Sbjct 888 GCCATTCGCAGTTTCACAGTATACAGTTGTTTATACTTAGACATGCA------------T 935 Query 480 GAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||| Sbjct 936 GAGACAAGCATATGACTACTGGCA 959 >seq123 Length=7390 Score = 414 bits (458), Expect = 3e-113 Identities = 412/529 (78%), Gaps = 26/529 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| || || | |||||| || ||||| ||||| | ||||||||| Sbjct 5835 GTACTCATTCCGATTACGAGGCCTCGAAAGAGTCCCGTATCGTTATTTTTCGTCACTACC 5894 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5895 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 5954 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 5955 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGT 6014 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || | | ||||||||||||||||||| |||||| ||||||| || | ||||||| Sbjct 6015 AGTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 6074 Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACC------AAGGA-----GCCCC 287 | | ||||||||| | ||||||| || ||| | || || | | | Sbjct 6075 ACTTGACCATGCGATCGGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGGACGC 6134 Query 288 GAAG------GGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTCGGGG 337 |||| | || | | |||| |||||||||| ||| ||| || ||| | | Sbjct 6135 GAAGCCCTCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGAG 6194 Query 338 TTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 || | | |||||||||||||||||||||||||| |||||||| ||| ||| ||| Sbjct 6195 TTCTGATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATC 6254 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 || ||| | ||||||| || |||||||||||| || || | || | | |||| || Sbjct 6255 TAAGGAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTTGCAC 6313 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6314 TGAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 6362 >seq11297 Length=3100 Score = 389 bits (430), Expect = 1e-105 Identities = 276/308 (90%), Gaps = 9/308 (3%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| || Sbjct 1 ACCATGGTAGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCA 60 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG 291 ||||| || ||||||| ||||||||| ||||||||||||||||||| | | ||| || Sbjct 61 TCGCCAGCACAAGGCCGTGCGATTCGAGAAGTTATTATGAATCACCA---AACTCCG-AG 116 Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTA-GCATG 348 | | ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||| Sbjct 117 GAGGATGG-TTTTTATCTAATAAATACACCCCTTCCAGAAGTCGGGGCTTTTTACGCATG 175 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||||||||||||||||||||| ||||||||||||| ||| || ||||||||||| |||| Sbjct 176 TATTAGCTCTAGAATTACCACAGTTATCCATGTAGCAAGAAAC-ATCAAATAAACTATAA 234 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| Sbjct 235 CTGATTTAATGAGCCATTCGCAGTTTCACAGTATAATTTGCGTATACTTAGACATGCATG 294 Query 469 GCTTAATC 476 |||||||| Sbjct 295 GCTTAATC 302 >seq158868 Length=489 Score = 340 bits (376), Expect = 5e-91 Identities = 277/343 (81%), Gaps = 39/343 (11%) Strand=Plus/Minus Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 ||||||||||||||||||||||||||||||||||| || |||| || ||| | |||||| Sbjct 489 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACAGCGCCAGCACAAAGGCATGCGC 430 Query 254 TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATA 313 |||| ||||||||||||||||||| ||| || |||| | |||||||||||||||||| Sbjct 429 TTCGACAAGTTATTATGAATCACCACAGAG-TCCAAAGGACATTGGTTTTTTATCTAATA 371 Query 314 AATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 |||||||| ||| ||| ||||| |||||||||||||||||||||||||| | | Sbjct 370 AATACACCTCTTACGA------GGTTTGATGCATGTATTAGCTCTAGAATTACCACAGGT 317 Query 374 ATCCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432 ||||||||||| |||| | |||||||||||||||||||||| |||||||||||||||||| Sbjct 316 ATCCATGTAGTAAAGGCAATATCAAATAAACGATAACTGATATAATGAGCCATTCGCAGT 257 Query 433 TTCACTGTATAG-------------------------------ATTGCTTATACTTAGAC 461 |||||||||||| |||||||||||||||| Sbjct 256 TTCACTGTATAGTTGCTTATACTTAGACNNNNNNNNNNNNNNNNTTGCTTATACTTAGAC 197 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 196 ATGCATGGCTTAATCTTTGAAACAAGCATATGACTACTGGCAG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506214938368