Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq248049 268 2e-67 seq153771 262 1e-65 seq136878 241 3e-59 seq226360 140 8e-29 >seq248049 Length=1043 Score = 268 bits (296), Expect = 2e-67 Identities = 272/351 (77%), Gaps = 4/351 (1%) Strand=Plus/Plus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 |||||| | ||||| | ||||||||||| ||| || |||||| |||| ||||| | Sbjct 562 GACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGCGCTTCACCGCC 621 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 |||| || ||||| || |||||||||||||| || || || || ||| ||||| ||| Sbjct 622 TCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGCTCGACC-GCAC 680 Query 12295 --GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGG 12352 ||| ||||||||||||||| ||||| || ||| |||||||| | | ||||| ||| Sbjct 681 CAGCGG-CGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACATCTGGCGGCAGG 739 Query 12353 CCGCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGC 12412 | |||||||||||| | ||| | | || ||||| || ||||||||||||||| || Sbjct 740 CTGCCGAGAACGTCACGGAGTCGCTCACCCGCGGCTCCCGCGTCATCGTCACCGGCCGGC 799 Query 12413 TCAAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGG 12472 ||||| |||| ||||||||| || || |||||||| ||||||||||| ||||||| Sbjct 800 TCAAGCAGCGCAGCTTCGAGACCAAGGAAGGCGAGAAGCGCACCGTCATCGAGCTGGAGG 859 Query 12473 TCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCCACCGTGAACAAGG 12523 ||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct 860 TCGACGAGATCGGCCCCTCGCTGCGGTACGCGACCGCCAAGGTCAACAAGG 910 >seq153771 Length=831 Score = 262 bits (290), Expect = 1e-65 Identities = 273/358 (76%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 12185 TCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCGGCCGGTGCTG 12244 |||||||| |||||||||| || | ||||||||| ||||||||||||| | || || | Sbjct 427 TCACCATCGTCGGCAACCTCGTCGACGACCCCGAGCTGCGGTTCACGCCCTCGGGCGCCG 368 Query 12245 CCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAGGCGAACGAGT 12304 | |||||||||||| | |||| ||||| |||||||||||| || ||| | ||||| | Sbjct 367 CAGTCGCCAACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCGTCAGACCAACGACT 308 Query 12305 GGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCCGCCGAGAACG 12364 || ||||||| |||| ||||| | |||| |||||||||| |||| |||||||||| Sbjct 307 GGGAGGACGGTGAGGGCATGTTCCTCACCTGCTCGGTGTGGCGTCAGGCGGCCGAGAACG 248 Query 12365 TCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTCAAGTCCCGCA 12424 |||| ||| |||| ||| ||| ||| ||| ||||| || ||||||||| |||| Sbjct 247 TCGCGGAGTCCTTGCAGCGCGGCATGCGCGTCGTCGTCCAGGGACGGCTCAAGTCGCGCA 188 Query 12425 CCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTCGACGAGATCG 12484 ||| |||||| || ||||| |||||||| |||||| |||| | |||||||| ||| ||| Sbjct 187 CCTACGAGACCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAGGTCGAGGAGGTCG 128 Query 12485 GCCCCAGCCTCCGCTACGCCACCGCCACCGTGAACAAGGCCAACCGCGGCGGGGGAGG 12542 | || ||||| | |||||| |||| || ||| ||| ||| |||| || || Sbjct 127 GGCCGAGCCTGAAGTTCGCCACGGCCAAGGTCAACCGCGCCTCGCGCAGCGGCGGCGG 70 >seq136878 Length=1830 Score = 241 bits (266), Expect = 3e-59 Identities = 268/358 (75%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 12185 TCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCGGCCGGTGCTG 12244 ||||| ||||||| |||||| ||||| ||||| |||| ||||| ||| ||||||| | Sbjct 386 TCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGCGTTTCACCCCGTCCGGTGCGG 327 Query 12245 CCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAGGCGAACGAGT 12304 | || |||||||||||||| |||||||||||||| | ||||||| ||| | ||||| | Sbjct 326 CGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGTTCGACCGTCAGACCAACGAAT 267 Query 12305 GGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCCGCCGAGAACG 12364 |||| ||||| ||||| ||||||||||| ||| | ||||| ||||| |||||||||| Sbjct 266 GGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGCATCTGGCGGGAGGCGGCCGAGAACG 207 Query 12365 TCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTCAAGTCCCGCA 12424 | || |||||| | | ||| | || |||||||| | || ||||||| ||| Sbjct 206 TGGCGGAGAGCCTCACCAAGGGTGCTCGTGTCATCGTGTCGGGTCGGCTCAAGCAGCGCT 147 Query 12425 CCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTCGACGAGATCG 12484 ||| ||| || || ||||| |||||||| || || |||| || |||||||| ||| ||| Sbjct 146 CCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTCGAGCTCGAGGTCGAGGAGGTCG 87 Query 12485 GCCCCAGCCTCCGCTACGCCACCGCCACCGTGAACAAGGCCAACCGCGGCGGGGGAGG 12542 | ||| || ||||| ||||||| || ||| ||| || ||||| || || Sbjct 86 GTCCCTCGCTGAAGTACGCGACCGCCAAGGTCAACCGCGCCTCGCGTGGCGGTGGCGG 29 >seq226360 Length=376 Score = 140 bits (154), Expect = 8e-29 Identities = 236/339 (70%), Gaps = 24/339 (7%) Strand=Plus/Plus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 ||||| | ||||| | ||||||||||| ||| ||||| ||| |||| | ||||| | Sbjct 15 GACACGATCATCACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCTACACGCAG 74 Query 12235 GCCGGTGCT-GCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCA 12293 ||| ||| ||||| || ||||||||| |||| ||| || |||| Sbjct 75 AGCGG-GCTCGCCGTGGCGAACTTCACCATCGCCAGCACCCCCCGCANN----------- 122 Query 12294 GGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTG-TGGCGTGAGG 12352 |||||||||||||| ||||| |||||| | || ||| || ||||||||| Sbjct 123 -------GAGTGGAAGGACGGCGAGGCCCTGTTCCTCCGG-GCCTCCTGCTGGCGTGAGT 174 Query 12353 CCGCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGC 12412 ||||||| ||||||||| | || | |||| || ||||||| ||| | Sbjct 175 TCGCCGAGCACGTCGCCGGGTCGCTGACCAAGGGCAGCCGCGTCATCGCGCAGGGCCGCC 234 Query 12413 TCAAGTCCCGCACCTTCGA-GACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAG 12471 | ||| ||| ||| ||| ||| || || || | ||||| |||| ||||| || ||| Sbjct 235 TGAAGCAGCGCTCCTACGACGAC-CGCGATGGCAACAAGCGCACCGCGATCGAGCTCGAG 293 Query 12472 GTCGACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCC 12510 ||||||||||||||||| |||||||| || || |||||| Sbjct 294 GTCGACGAGATCGGCCCGAGCCTCCGTTATGCGACCGCC 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125779972282856