Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq153771 246 8e-61 seq136878 187 6e-43 seq248049 149 2e-31 seq226360 145 2e-30 seq266192 96.9 9e-16 seq46609 89.7 1e-13 >seq153771 Length=831 Score = 246 bits (272), Expect = 8e-61 Identities = 269/354 (76%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 36428 GAAACCCCTA--TCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCA 36485 || || |||| |||||||||| ||||||||| || ||||||||| ||||| | || Sbjct 439 GAGACACCTACGTCACCATCGTCGGCAACCTCGTCGACGACCCCGAGCTGCGGTTCACGC 380 Query 36486 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGC 36545 |||||| || |||||||||||| | |||| ||||| || ||||| ||| |||| | Sbjct 379 CCTCGGGCGCCGCAGTCGCCAACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCGTC 320 Query 36546 AAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGC 36605 | ||||||| ||| ||||||| |||| | ||||||| |||||||||||||||||||| Sbjct 319 AGACCAACGACTGGGAGGACGGTGAGGGCATGTTCCTCACCTGCTCGGTGTGGCGTCAGG 260 Query 36606 CGGCCGAGAACGTGGCCGAATCGCTGGCCAAG-GGCATGCGTGTGATCGTCCAGGGACGT 36664 ||||||||||||| || || || || || | |||||||| || ||||||||||||| Sbjct 259 CGGCCGAGAACGTCGCGGAGTC-CTTGCAGCGCGGCATGCGCGTCGTCGTCCAGGGACGG 201 Query 36665 CTCCGGGCGCGCAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCGAA 36724 ||| | |||||| |||||| |||||| || | ||||| || ||| |||||| Sbjct 200 CTCAAGTCGCGCACCTACGAGACCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAG 141 Query 36725 GTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGCTACCGTCACCCGCGCC 36778 ||||| || || || ||| ||||||| ||||| || | |||| ||||||| Sbjct 140 GTCGAGGAGGTCGGGCCGAGCCTGAAGTTCGCCACGGCCAAGGTCAACCGCGCC 87 >seq136878 Length=1830 Score = 187 bits (206), Expect = 6e-43 Identities = 246/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 36438 TCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCAATTCGGGCATTG 36497 ||||| || | || ||||| ||||| || ||||||||||| | ||| || || | Sbjct 386 TCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGCGTTTCACCCCGTCCGGTGCGG 327 Query 36498 CCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGCAAGCCAACGAAT 36557 | || |||||||||||||| || ||||| || || | |||||||| || ||||||||| Sbjct 326 CGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGTTCGACCGTCAGACCAACGAAT 267 Query 36558 GGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGCCGGCCGAGAACG 36617 |||| ||||||||||| |||||| ||| ||| | ||||| || |||||||||||| Sbjct 266 GGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGCATCTGGCGGGAGGCGGCCGAGAACG 207 Query 36618 TGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTCTCCGGGCGCGCA 36677 |||| || || ||||||| ||||| ||||| ||| || ||| | |||| Sbjct 206 TGGCGGAGAGCCTCACCAAGGGTGCTCGTGTCATCGTGTCGGGTCGGCTCAAGCAGCGCT 147 Query 36678 GCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCGAAGTCGATGACGTGG 36737 |||||| |||||| || | ||||| ||| ||| | |||| ||||| || || | Sbjct 146 CCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTCGAGCTCGAGGTCGAGGAGGTCG 87 Query 36738 GCCCGGCGTTGAAGTTTGCCACCGCTACCGTCACCCGCGCC 36778 | || || |||||| || ||||| | |||| ||||||| Sbjct 86 GTCCCTCGCTGAAGTACGCGACCGCCAAGGTCAACCGCGCC 46 >seq248049 Length=1043 Score = 149 bits (164), Expect = 2e-31 Identities = 246/350 (70%), Gaps = 10/350 (3%) Strand=Plus/Plus Query 36426 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCA 36485 |||| ||| ||||| | || |||||||| || ||||| ||||| ||||| | ||| Sbjct 560 GCGACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGCGCTTCACCG 619 Query 36486 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCG-G 36544 || ||| ||||| || ||||||||||||||||| || || || || ||||||| Sbjct 620 CCTCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGCTCGACCGCA 679 Query 36545 CAAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAG 36604 | || | ||| |||||||||||||||||||| ||||||| |||| | ||||| ||| Sbjct 680 CCAG-CGGCGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACATCTGGCGGCAG 738 Query 36605 CCGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGT 36664 | ||||||||||| | || ||||| || ||| || || |||||| || || Sbjct 739 GCTGCCGAGAACGTCACGGAGTCGCTCACCCGCGGCTCCCGCGTCATCGTCACCGGCCGG 798 Query 36665 CTCCGGGCGCGCAGCTACGACGACCGCGACGGAAACCG----TCGCACTGTGATCGGGAT 36720 ||| | |||||||| ||| |||| | |||| || ||||| || |||| | | Sbjct 799 CTCAAGCAGCGCAGCTTCGA-GACC---AAGGAAGGCGAGAAGCGCACCGTCATCGAGCT 854 Query 36721 CGAAGTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGCTACCGTCA 36770 || ||||| || | ||||| || || || || ||||| | |||| Sbjct 855 GGAGGTCGACGAGATCGGCCCCTCGCTGCGGTACGCGACCGCCAAGGTCA 904 >seq226360 Length=376 Score = 145 bits (160), Expect = 2e-30 Identities = 215/307 (70%), Gaps = 20/307 (7%) Strand=Plus/Plus Query 36437 ATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATAC-CAATTCGGGCAT 36495 ||||| | || |||||||| || |||||||| || ||||| || || || ||||| | Sbjct 24 ATCACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCTACACGCAGAGCGGGC-T 82 Query 36496 TGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGCAAGCCAACGA 36555 ||||| || ||||||||| |||| ||| || |||| || Sbjct 83 CGCCGTGGCGAACTTCACCATCGCCAGCACCCCCCGCANN------------------GA 124 Query 36556 ATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGCCGGCCGAGAA 36615 |||||||||||||||||||||||||| | ||| |||||| || |||||| | Sbjct 125 GTGGAAGGACGGCGAGGCCCTGTTCCTCCGGGCCTCCTGCTGGCGTGAGTTCGCCGAGCA 184 Query 36616 CGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTCTCCGGGCGCG 36675 ||| |||| |||||| ||||||||| || || |||| ||||| || || | ||| Sbjct 185 CGTCGCCGGGTCGCTGACCAAGGGCAGCCGCGTCATCGCGCAGGGCCGCCTGAAGCAGCG 244 Query 36676 CAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCGAAGTCGATGACGT 36735 | ||||||||||||||| || ||| ||||| | ||||| | |||| ||||| || | Sbjct 245 CTCCTACGACGACCGCGATGGCAACAAGCGCACCGCGATCGAGCTCGAGGTCGACGAGAT 304 Query 36736 GGGCCCG 36742 |||||| Sbjct 305 CGGCCCG 311 >seq266192 Length=333 Score = 96.9 bits (106), Expect = 9e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 9827 GCGCGTGGCTCCGCCGCGGCGCTGGTGTCTTGGCGCCACACGTGTCCGCAGTCGGCACAG 9886 || || ||||||||||| |||| ||||||||| ||||||||||| |||||| ||| ||| Sbjct 117 GCTCGCGGCTCCGCCGCCGCGCCGGTGTCTTGTCGCCACACGTGCCCGCAGCCGGTGCAG 58 Query 9887 CGGTAGCGGCGCACTACAACTTCCAGCACGGTCGGTCGCCAGCCCA 9932 |||||||||||||| || ||| | ||||| ||||| |||| Sbjct 57 CGGTAGCGGCGCACCGTCACCAGCAGAATCGTCGGCCGCCACCCCA 12 >seq46609 Length=4533 Score = 89.7 bits (98), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 857 TGGCGGGTGAAGGCGGCGAATCGTCGCGGTGGCCGTGGCGCCCGGCAGGTGAAGTTGGTG 916 |||| |||||||||||||| || | ||||||||| | | || ||| || | Sbjct 3320 TGGCTCGTGAAGGCGGCGAACCGGAAGGCCGGCCGTGGCCTCT--CCGG-GAACCTGATC 3264 Query 917 CTGCTCGACGAGACCCGCGAGCAGCAGACGTGGGACGCGTGGGGCGCGATCACCAAGACC 976 ||| | |||||| ||||||||||||| |||| || |||||||||||||| |||||| Sbjct 3263 CTGATGGACGAGCTGCGCGAGCAGCAGAACTGGGCGGCCTGGGGCGCGATCACGAAGACC 3204 Query 977 ACGAACGCGGTGCCGGAGGCGCTGATCCT-GTGCACCTCCAACGCGGGCGATGCGTCTTC 1035 || | ||| | || |||||||| | || || ||||| ||||| | | || Sbjct 3203 ACCCAGGCGCAGGACGACCTACTGATCCTCGCGC-TGTCGAACGCCGGCGACGTCGCGTC 3145 Query 1036 CGTGGTGCTGCGCTATTTGCGGTTGATGTGCCACAAGGCCCTGGGCGATCCGGACGGTGT 1095 || ||||| || | ||||| | | | ||||| || | ||||| |||||||| | Sbjct 3144 AGTCGTGCTCCGGCACCTGCGGATCAAGGCCCACATCGCGATCGGCGACCCGGACGGCAT 3085 Query 1096 GGCCGCCGA 1104 |||| ||| Sbjct 3084 CGCCGGCGA 3076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126309424443292