Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq244739 120 4e-22 seq222154 100 4e-16 seq36828 86.0 9e-12 >seq244739 Length=1400 Score = 120 bits (132), Expect = 4e-22 Identities = 235/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 ||||| ||||||| || || || || | || || || || || || || || || || Sbjct 333 GAGACGCCCCAGACCGAGACGACGCCGTTCTACCCGCGGTCGCCGTACGGTGTCGCGAAG 392 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 || || |||||||||||| ||||||||||| | || || | || | || | || | Sbjct 393 CTGTACGGGTTCTGGATCGTCAAAAACTACCGTGAGTCGTACGGTATGTACGCTTGTAAC 452 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 || ||||| ||||||||||| || | ||| | || ||||||||||| || |||||| Sbjct 453 GGCATTCTCTTCAATCACGAGAGTCCGCGCCGTGGTCGCACGTTCGTCACTCGGAAGATC 512 Query 162676 GTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA-AAGTG-ATCTACAACTTGGAAACC 162733 || || || | || | | || | || ||| ||||| || || || | Sbjct 513 TCTCGCGCGGTGGCTGAGATCAAGCTCGGCCAGCAGCCGTGCCTCTAC--CTCGGCAATC 570 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 | ||| |||||||||||||| || |||||||| |||| ||||||| ||||| Sbjct 571 TGTCGGCCAAGCGTGACTGGGGACATGCGCGTGACTACGTCGAGGGTATGTGGCAGATGC 630 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||||||| || |||| || || | || |||| || || ||| Sbjct 631 TTCAGCAGGACCAGCCGGACGACTTCGTTCTCGCGACCGGCGAG 674 >seq222154 Length=451 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||||||||| ||||| |||||| ||||| ||||||| Sbjct 64 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 123 Query 142852 TCCGTTATTCTCCACCA 142868 ||| ||||||||||||| Sbjct 124 TCCCTTATTCTCCACCA 140 >seq36828 Length=6619 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct 4122 CGGGGCCTTAGCTCAATTGGTAGAGCGCCTGCTTTGCAAGCAGGAGGTCAGGGGTTCGAT 4063 Query 142852 TCCGTTATTCTCCAC 142866 ||| || |||||| Sbjct 4062 TCCCCTAGGCTCCAC 4048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689064305131080