Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq42954 147 2e-30 seq12094 114 1e-20 >seq42954 Length=2876 Score = 147 bits (162), Expect = 2e-30 Identities = 886/1416 (63%), Gaps = 50/1416 (4%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 || || || || || | |||||||| |||||||||||||| |||||||| |||||||| Sbjct 918 TAAATATTTGATGTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 977 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGT----T 65577 ||||| ||||| || || | ||| | || || ||||| || | || | || | | Sbjct 978 GCAGTCGGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCT 1037 Query 65578 GTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATC 65637 ||| | | | ||||| ||| | ||| | | | || | | ||||||||| Sbjct 1038 TTGAGGACAGT----CCAGTCCCAAA--GGTCTGTAG--GAGTT--TTGTTCCACATATC 1087 Query 65638 CTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTC 65697 | || ||| | || || || || || | | | ||| | || || | Sbjct 1088 ATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTATGCACCTTCTTT 1147 Query 65698 CTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCG 65757 | || | || ||| || | || | ||| || ||||||| || || || || || | Sbjct 1148 TTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTG 1207 Query 65758 ATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGC 65817 |||||| ||| | || || ||||| || || | ||||| ||||| || || || Sbjct 1208 ATTAAGGAGTATTGCTTTCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGC 1267 Query 65818 CAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGG 65877 || ||| ||||| |||||||||| ||||| || | || ||| ||| | | || ||||| Sbjct 1268 CATACCCTGAACACCAATACCGACAGGACGGTGCCTCATATTTGAAGTTTTTGCTTCAGG 1327 Query 65878 TACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT 65937 ||||| || | || | ||| || | || ||||| | ||||| | | ||| Sbjct 1328 GACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTCTGAGTCACAATCTTAGTGAT 1387 Query 65938 ACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAA 65997 | |||| || |||| ||| | ||| | ||||| Sbjct 1388 TTCTTTTAATTTTTTAAAATTAAATCGATTA------------------TTTTCAACAAA 1429 Query 65998 CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTC 66057 | || ||| || | || || |||||||| || || | || || | || || | Sbjct 1430 CATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTG 1489 Query 66058 GACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTT 66117 |||| || ||||| ||||| || || || ||||| | ||| | |||||||||||| Sbjct 1490 CACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTT 1549 Query 66118 GCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAAT 66177 | ||||| |||||||| |||| ||| || || || || ||||| ||||| | || || Sbjct 1550 CCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTAT 1609 Query 66178 GATGGCGTGCCAAAGAGCGCGTGCCTTCAC-CG---TACGTACCGCCCTACCTTTGCGTT 66233 || | | ||| | | | || | || || || |||| ||| || Sbjct 1610 AATTGACTTCCATAACTCTTGAGCTCTGACTCGTTTTATAAACCG-------TTTTTCTT 1662 Query 66234 CGTAATGTT---CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 | | || || | || || |||||| || || | || | || | |||| Sbjct 1663 CTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCCGTAACAGTCAGCGAGGCCAGGAC 1722 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 | | || |||||||| || |||||| |||||| |||||| | |||||| |||| Sbjct 1723 AATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACCCTTTTCATAAACAGAT 1782 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTT 66409 | |||||||| | || || || || || | |||| || || | || ||| || Sbjct 1783 CTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTC 1841 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || || | ||||||||| ||||| |||||||| || || | ||| || || || Sbjct 1842 TTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAAT 1901 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||||||| |||||||| || || || | || ||||||| | || | | Sbjct 1902 GCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTCTC 1961 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 ||||| || || || || || || ||||| ||||| | || || || | || Sbjct 1962 AACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCTATATAAGACCCCTGGGCT 2021 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649 | || || || | ||| || |||||||| | || || || ||||| | Sbjct 2022 CTAATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATTGT 2081 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | || ||| || || ||||| || | || || | | ||| |||| || Sbjct 2082 TTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAGGAG 2141 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 ||| || || ||||| || || ||||| || || || | || || ||||| || Sbjct 2142 GAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATAT 2201 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCG 66829 | ||||| ||| || || | ||| || |||||||| ||| |||||||| || Sbjct 2202 TTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCT 2261 Query 66830 AGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTC 66864 | || | | || ||| || | || |||||| | ||| Sbjct 2262 A-TGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2296 >seq12094 Length=2216 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||||||||| || ||||| |||| | ||| ||| || || ||||| || | Sbjct 208 TTGTTCAATGCAATTGAGACTCTACCATGTATTAAGAAGAAGGCAGACTGGGCGTTACAG 267 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| ||| | || || |||||||| ||||| | | || ||||||| ||| ||| Sbjct 268 TGGATCGGCAGCAAGACTGCCACATTTGGAGAACGTATTATCGCTTTTGCGGCGGTTGAG 327 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||||||| || ||||| |||| ||||||||||| ||||| || | ||| Sbjct 328 GGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGCTTGATG 387 Query 61576 CCCGGTCTGACCTTCAGCAATGA 61598 ||||| | || ||||||||||| Sbjct 388 CCCGGATTAACTTTCAGCAATGA 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396325906500080