Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2205 250 2e-61 seq1613 167 2e-36 >seq2205 Length=656796 Score = 250 bits (276), Expect = 2e-61 Identities = 1011/1578 (64%), Gaps = 41/1578 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| ||||| || || | ||| || | | ||||||||| || || Sbjct 19194 TCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTT 19253 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | ||| ||| ||||||||||| || |||| ||||| ||||||| || || Sbjct 19254 TTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCA 19313 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || ||||| ||||| || || || |||||||| || | || | || |||||||| Sbjct 19314 GCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCATT 19373 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 | || | | | || | |||||||| || || || | | | || || | Sbjct 19374 TGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTTTA 19433 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAATAATGCGATTACGCATCGA 65376 ||||| | ||||| | || | || ||| | ||| || || |||| ||| Sbjct 19434 GGAATTGCTTCAATATTTTGAATAGATCCATTATTGTG-GATGATAAGATTTTTCATATC 19492 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| ||| | || | | || | | | ||| ||| |||| | |||||||| Sbjct 19493 TTCATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTGGAA 19552 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || |||| || || | ||| |||||||| || | |||||||| |||||| | Sbjct 19553 TTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTCATT 19612 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 || || | ||||| ||||| |||||||||||||| ||||| | || | || |||| Sbjct 19613 ATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCT 19672 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 | || | | | || || | | | |||| ||||||| || | | | Sbjct 19673 AAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACA--AGTCTGTGGGG 19730 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 | | ||||||||| | ||||| | || |||||| || | || | Sbjct 19731 GTTTT----ATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATA 19786 Query 65677 ACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATA 65736 | | || || || || | || || || | | ||| |||| || ||||| || |||| Sbjct 19787 AGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATA 19846 Query 65737 AATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC 65796 ||| || || || || || |||| | || | ||| | || || ||||| || |||| Sbjct 19847 AATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATACG 19906 Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 ||| | ||||| | || || | ||||| |||||||| |||||||| || || | || Sbjct 19907 CATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCAT 19966 Query 65857 ATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATT 65916 ||| || | | ||||| || || ||||| ||||| | ||| ||||| ||| | ||| Sbjct 19967 ATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGATT 20026 Query 65917 GCGTGTCA---CCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACG 65973 | || | | | || | | | | ||| | ||||| | |||||| | Sbjct 20027 CTGAGTTATAGTCTTAGTAAC--TTCCTTTAATTTGGT-GAAAT-TATATGTTTTG---- 20078 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || | | ||||||| | | |||| ||||| || ||||| ||||| Sbjct 20079 -TCCTCATT---------CACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGC 20128 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 | || || | | ||| || || |||||||| ||||||| || ||||| || || Sbjct 20129 CACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGT 20188 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||||| |||| ||| || || || | |||||||| ||| || || | |||||| ||||| Sbjct 20189 ACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGT 20248 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC-CGT-- 66210 || || |||||||| | || || || || | ||||||| | | || |||| || Sbjct 20249 TCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTTGAGCTCTCACTTGTTT 20308 Query 66211 -ACGTACCG-CCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 ||| | || |||| |||| ||| || | || || | ||| || |||||| Sbjct 20309 CACGAAGCGACCCT--CTTT---TTCATATTTCTCATACAAAGCTTCAAATTCCTCACCC 20363 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || | || | ||||| | || || ||||| | |||||| || | Sbjct 20364 CAACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGATTGCTT 20423 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 ||||| | ||| || | ||||||||||| | || ||||| || || | || || Sbjct 20424 TCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGG 20483 Query 66389 TGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 || || | || ||| || || ||| || ||||| ||||| || || |||||||| Sbjct 20484 ACTTCTTCTTTCCCAGTG-TTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCA 20542 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 |||||| | ||| ||||| || | ||| | ||| || |||||||| || || || Sbjct 20543 TGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCG 20602 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| |||||| | || | ||||| ||||| || || ||||| ||||| || || Sbjct 20603 AGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACC 20662 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGT 66627 | || | ||| ||| | || ||| |||| ||||| || ||||| || | Sbjct 20663 AGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGACCTATCCCACCAGCTGA 20722 Query 66628 CTTCGAGATGGCAGCACA 66645 ||| || ||| ||||| Sbjct 20723 CTTAGAAATGAGGGCACA 20740 >seq1613 Length=46735 Score = 167 bits (184), Expect = 2e-36 Identities = 178/234 (76%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || |||||| ||||||||| | | | | |||| ||| ||||| || Sbjct 40985 TTTGTTCAG-GACATGTCAGACTGGGAGAATCTCAAGGACAGTGAGAGACACTTCATCAA 40927 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||||| |||| |||||||| || || || || || ||||||||||| || ||||||| Sbjct 40926 ACATGTGCTGGCTTTCTTTGCTGCGTCTGATGGCATTGTCAATGAGAACTTGGTGGAACG 40867 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | || |||||||||||| | || || | || |||||||| ||||||||||| || Sbjct 40866 CTTCTCCCAAGAGGTGCAAGTGACAGAAGCCAGATGCTTCTACGGATTCCAGATTGCTAT 40807 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||||| ||||| ||||||||| | ||||| || || ||||| || || Sbjct 40806 GGAGAATGTTCACTCTGAGATGTACTCCTTGCTCATTGACACATACATTAGAGA 40753 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 |||| ||||| || || || | || |||||| ||| || || |||||| || | | Sbjct 40539 TGTTTAATGCTATTGAAACCCTGCCCTGTGTGAAGAAGAAGGCTGACTGGGCCCTCCAGT 40480 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 |||| | || | | || ||||||| ||| || | | || ||||| | || || | Sbjct 40479 GGATTGCAAGCAAGTCAGCCACATTTGCTGAGCGTATCATTGCCTTTGCTGCTGTTGAAG 40420 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | |||| ||| ||| ||||| ||||||||||| ||||||| || ||| | |||| Sbjct 40419 GCATATTCTTCTCTGGCAGTTTTGCATCAATCTTTTGGATGAAGAAGCGAGGATTGATGC 40360 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 | || |||| |||||||||||| |||| || | || |||| Sbjct 40359 CTGGATTGACATTCAGCAATGAGCTGATTTCTAGAGATGAGG 40318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553585054000