Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq102 95.1 2e-17 >seq102 Length=2182 Score = 95.1 bits (104), Expect = 2e-17 Identities = 172/244 (70%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCATGG 132 |||||||| |||||||||| | ||||| ||| | ||| |||| || | |||| Sbjct 1380 ACTTTGAACAAATTAGAGTACTTAAAGCGGGCTTCAAATGCCTAAATATTTTGTGGATGG 1439 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGG---ACCGCCGTAATG 188 |||||| || | ||| | | ||||| ||| || |||| | | | | |||||| Sbjct 1440 AATAATGAAACAAGACCTATG-TTCTACTTTCATTAGTTTTTCGATTTAAAG--GTAATG 1496 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||| | ||| || | | |||||| | | ||||||||||||||||||| Sbjct 1497 ATTAATACAAAAAGTTGGTGACATTAGTATTAAGACGCCAGAGGTGAAATTCTTGGACAG 1556 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||||||||| || ||| | ||| |||| ||||||||||||||||| |||||| Sbjct 1557 TCGTAAGACTAACTTAAGCAAAATCATTCGCCAAAGATGTTTTCATTAATCA-AGAACGA 1615 Query 309 AAGT 312 |||| Sbjct 1616 AAGT 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913980093312