Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq105375 208 3e-51 seq24646 91.5 6e-16 seq53474 87.8 7e-15 >seq105375 Length=2155 Score = 208 bits (230), Expect = 3e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1710 TGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 1769 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 1770 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 1829 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| Sbjct 1830 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 1884 >seq24646 Length=6885 Score = 91.5 bits (100), Expect = 6e-16 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||| | ||| | | ||||| ||| |||||| ||| Sbjct 5293 TGTTTTGACCCGAAAGATGGTGAACTATACTTGATCAAGTTGAAGTCAGGGGAAACCCTG 5234 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | || | | |||||| | || ||||| || |||| | |||||| || | |||| Sbjct 5233 ATGGAAGACCGAAACAGTTCTGACATGTAAATCAATTGTCAGAATTGGGTTTACGAGCGA 5174 >seq53474 Length=3256 Score = 87.8 bits (96), Expect = 7e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||| ||||| ||| ||||| ||| |||||| ||| |||| | | | | | Sbjct 1352 TGGTGAACTATACCTGATCAGGTTGAAGTCAGGGGAAACCCTGATGGAAGACCTAAACAG 1411 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||||||| |||| | |||| | |||||| || Sbjct 1412 TTCTGACGTGCAAATCGATTGTCAGAATTGGATTTAGGGGTGA 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077140843700