Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq105375 185 1e-44 seq56779 113 7e-23 seq23010 75.2 2e-11 >seq105375 Length=2155 Score = 185 bits (204), Expect = 1e-44 Identities = 158/192 (82%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 192 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 133 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCC--- 117 ||||||||||||| | ||||| || || | | ||||||||||||||||| | Sbjct 132 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATAGTCCCTCTAAGAAGACATA 73 Query 118 AGCCACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 || ||||| | | ||| | | ||||||||||||| ||||||||||||||||||||| Sbjct 72 AGGGGCCAACAAAATGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCGGA 13 Query 177 ATTAACCAGACA 188 |||||||||||| Sbjct 12 ATTAACCAGACA 1 >seq56779 Length=28500 Score = 113 bits (124), Expect = 7e-23 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||||||||||||||||| ||||||||| | || || |||||||||||||||| | Sbjct 12043 GTCTTGTTCGTTATCGGAATTAATCAGACAAATTATTCTACGAACTAAGAACGGCCATAC 12102 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 | ||||| ||||||| |||| ||| |||||| ||| Sbjct 12103 ATCACCATCCATAGATTCAAAAAAAAGCTATTAAT 12137 >seq23010 Length=12063 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/53 (92%), Gaps = 2/53 (4%) Strand=Plus/Minus Query 162 TCGTTCGTTATCGGAATTAACCAGAC--AAATCACTCCACCAACTAAGAACGG 212 |||||||||||||||||||||||||| ||||| |||||| |||||||||||| Sbjct 1143 TCGTTCGTTATCGGAATTAACCAGACAAAAATCGCTCCACGAACTAAGAACGG 1091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795771103614