Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq25812 446 5e-123 seq31392 250 8e-64 seq2171 165 3e-38 seq99158 89.7 2e-15 seq53460 89.7 2e-15 seq27474 89.7 2e-15 seq57377 80.6 9e-13 >seq25812 Length=6288 Score = 446 bits (494), Expect = 5e-123 Identities = 277/297 (93%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| | ||| | ||| | | |||||||||||||||||| Sbjct 2770 CTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGCTCAA 2711 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 2710 CAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 2651 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2650 ATAGTAGATAGGGACAGAAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 2591 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2590 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAC 2531 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2530 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 2474 >seq31392 Length=9763 Score = 250 bits (276), Expect = 8e-64 Identities = 169/188 (90%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 263 TCATTTCACAAA-GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 |||||| |||| | | |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 3170 TCATTTAACAACTGCCAGACTAGAGTCAAGCTCAACAGGGTGTTCTTTCCCCGCTAATTA 3229 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 |||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct 3230 TTCCAAGCCCATTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGAGACAGAAGGAATC 3289 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3290 TCGTTAATCCATTTATGCGCATCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 3349 Query 442 AGTCATAG 449 | ||| || Sbjct 3350 AATCAAAG 3357 >seq2171 Length=15101 Score = 165 bits (182), Expect = 3e-38 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7405 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTG 7464 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||| Sbjct 7465 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 7503 >seq99158 Length=1560 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 971 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 1030 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||||| ||||| Sbjct 1031 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGACTATGTC 1077 Score = 78.8 bits (86), Expect = 3e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| | ||| | ||| | | |||||||||||||||||| Sbjct 1425 CTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGCTCAA 1484 Query 297 CAGGGTCTTCT 307 ||||||||||| Sbjct 1485 CAGGGTCTTCT 1495 >seq53460 Length=3271 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 1062 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 1003 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||||| ||||| Sbjct 1002 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGACTATGTC 956 >seq27474 Length=10166 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 3461 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 3520 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||||| ||||| Sbjct 3521 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGACTATGTC 3567 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| ||||| | |||||| Sbjct 3631 CTTTTGCTCTATGTGTGGTTTCTGTCCCCACTGAGCTGACCTTGTGACACATCCGTTATT 3690 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||||| ||||| Sbjct 3691 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGACTATGTC 3737 >seq57377 Length=12859 Score = 80.6 bits (88), Expect = 9e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||||| || ||||| ||| ||||| ||||||||||||||||||||| |||||| Sbjct 5903 CCAAGCCCCTTTATTTGGCGGTGATTTCGTTAGATAGTAGATAGGGACAGTAAAAATCTC 5962 Query 384 GTTAATCCATTCATGCGCGTCA 405 ||||| ||||||| || ||| Sbjct 5963 GTTAACTAATTCATGTGCTTCA 5984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633020376512