Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq122000 242 1e-61 seq98992 150 5e-34 seq102 98.7 3e-18 seq116116 91.5 4e-16 seq80117 87.8 5e-15 seq15415 82.4 2e-13 >seq122000 Length=2139 Score = 242 bits (268), Expect = 1e-61 Identities = 151/161 (94%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||| Sbjct 2101 GCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGCAAGAAAC-ATCAAATAAAC 2043 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| Sbjct 2042 TATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTATAATTTGCGTATACTTAGACAT 1983 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1982 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1942 >seq98992 Length=2903 Score = 150 bits (166), Expect = 5e-34 Identities = 211/286 (74%), Gaps = 20/286 (7%) Strand=Plus/Minus Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 |||||||||||||||||| |||||||||| ||| || |||||||| | |||||||||| Sbjct 576 ATTCCCCGTTACCCGTTGCAACCATGGTAGTCCAAGATACTACCATCAATAGTTGATAGG 517 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TA-- 268 ||||| ||||||| || | ||| ||| | || |||| ||| ||| || |||| || Sbjct 516 GCAGACATTTGAAAGATCTGTCGTCGGTACGAGACCATACGA-TCGGCAAATTATCTAGA 458 Query 269 --TGAATCA--CCAAGGAGCCCC--GAAGG--GCGTTGGTTTTTTATCTAATAAATACAC 320 | || || || || |||| ||| || | | |||| |||||||| ||| Sbjct 457 GTTCAACCATTTAAACGATCCCCTTACAGGTATCGATTGGTTTTAGCCTAATAAAAGCAC 398 Query 321 CCCTTCC--GAAGTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATC 376 | |||| | ||| | |||| || |||||||||||||||||||||||||| |||||| Sbjct 397 ACGTTCCATAAGGTCCGTGTTTATAATGCATGTATTAGCTCTAGAATTACCACAGTTATC 338 Query 377 CATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGA 420 || ||| | || || ||| ||| ||| ||||||||| |||||| Sbjct 337 CAAGTA--ACTGTTAACGATCTAATGAACCATAACTGATATAATGA 294 >seq102 Length=2182 Score = 98.7 bits (108), Expect = 3e-18 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || || |||| ||||| |||| |||||||| || ||| | | |||| |||| Sbjct 856 AGTCCAGTATTGTTATTTTTTGTTACTACCTCTTCGAACTAGGAGTTAATCATTTACGCG 797 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||| |||||| ||||| |||| ||| || ||||||||||| ||| |||||||| Sbjct 796 GCTGCTGCTTTCCTTAGATGTAATAGCTGTTACTAAGGCTCCCTCTTCGGGATCGAACCG 737 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 | ||| | ||||| || ||||| |||| ||| | |||||||| | |||| || Sbjct 736 TGATTTCATCCTACCCATTACAACCATTGTAGTCCAAGACACTACCATCAATAGTTAAT 678 >seq116116 Length=1201 Score = 91.5 bits (100), Expect = 4e-16 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 || || ||| |||| ||||||| || ||||||||| |||||||| ||||| | |||| | Sbjct 298 AAATTACGCACCTGTTGCCTTCTTTAGATGTGGTATCCGTTTCTTAGGCTTCTTCTCTAG 239 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||||||| | |||||||||||| || | ||| | |||||||| || || ||| Sbjct 238 CATCGAACC-TGATTCCCCGTTACTTGTCGTAACCTTAGTAGGCCAAAATATTATCATAA 180 Query 200 AAAGTTGATA 209 | ||||||| Sbjct 179 ATTGTTGATA 170 >seq80117 Length=3629 Score = 87.8 bits (96), Expect = 5e-15 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 ||| |||||| ||||||||||||||| || ||||| |||| ||||| ||| || |||| Sbjct 864 TGCTTTCCTTAAATGTGGTAGCCGTTTTTCTAGCTCCTTCTCTGGAATTGAATCCCAATT 805 Query 155 CCCCGTTACCCGTTGATACCA----TGGTAGGCCACTA---TCCTACCATCGAAAGTTGA 207 ||| ||| || ||| | || |||||| ||| | | |||||||| | |||||| Sbjct 804 CCCGATTATCCATTGCAATCATAGTTGGTAGTCCATGATACTACTACCATCAATAGTTGA 745 Query 208 TAGGGCAGAAATTTGAATGA 227 ||| |||| |||| || || Sbjct 744 TAGTCCAGACATTTAAAAGA 725 >seq15415 Length=19821 Score = 82.4 bits (90), Expect = 2e-13 Identities = 118/162 (73%), Gaps = 7/162 (4%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||||||| || |||| ||| ||||| | || | | || ||| ||| ||| Sbjct 13765 GCATGTATTAGCTTTA-AATTTCCATATTTATCAAAGTTGCGTTGAACGATCTAATGAAC 13707 Query 404 GATAACTGATTTAAT--GAGCCATTCGCAGTTTCACTGTATA---GATTGCT-TATACTT 457 |||| |||| |||| ||||| || | |||||| | ||| | |||| | | ||| Sbjct 13706 CATAATTGATATAATATGAGCCTTTTGTAGTTTCGCATTATTTTTGCTTGCACTTTGCTT 13647 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 || ||||||||||||| |||||||| || |||| | | |||| Sbjct 13646 AGCCATGCATGGCTTACTCTTTGAGGCAGGCATGTTATTACT 13605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508386727424