Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 295 5e-75
seq50502 109 4e-19
>seq69808
Length=9325
Score = 295 bits (326), Expect = 5e-75
Identities = 1000/1553 (64%), Gaps = 31/1553 (2%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || || || || || |||| ||||| | || || | | ||| ||||| || ||
Sbjct 8277 ATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGT 8218
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
|| | || ||| |||| |||||||| |||| || | ||||||| || ||
Sbjct 8217 TTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTC 8158
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| ||||| ||||| || || ||||||||||| ||| | |||||||||||||||||
Sbjct 8157 AGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCAT 8098
Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
| || | | | | || || ||||| || || || || | ||||
Sbjct 8097 TTGCATT-TGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATT 8039
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
|||| || | ||||| || || | ||||||||| |||||| || ||| |||
Sbjct 8038 TTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCATAT 7979
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||| ||| | | || | | || || | ||| | |||| | || |
Sbjct 7978 CATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAACAA 7919
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
| || || || | ||||||||| |||||| || || || || ||||| |||||
Sbjct 7918 ATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATTCGT 7859
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
| || |||| |||||| || || ||||| |||||||| || || | ||||| || ||||
Sbjct 7858 TATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTC 7799
Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATC 65613
| | || | || ||| || | | ||| | ||| ||||| | || ||| |
Sbjct 7798 GGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTG 7739
Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673
| | ||||||||| | ||| || | || || | ||||| ||
Sbjct 7738 TTTTATT--------CCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATC 7687
Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733
| | || || || | | || | || || || | ||| | ||| || |
Sbjct 7686 ATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATA 7627
Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793
|||||| || || || || || |||| | || |||| || || || || || ||
Sbjct 7626 ATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTA 7567
Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853
|| ||| | | ||| | || || | ||||| || |||||||| || || ||||||||
Sbjct 7566 ACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACG 7507
Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913
||||| || | | || || |||| ||| || ||||| ||||| ||||| ||||||
Sbjct 7506 AAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAA 7447
Query 65914 ATTGCGTGTCACCACATGCACGATACGTCGCAA--TTGTTCGAAATCAAAATGTTTAGGA 65971
||| | ||| || | | | || || | || || |||||| | | ||||
Sbjct 7446 ATTTCTTGTAACAATTTTT--GTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTA--- 7392
Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031
|| ||| | | |||||| | | |||| || || | || || |||
Sbjct 7391 ---TC-----TGCTGTA----ACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACA 7344
Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091
||||| || || || || | ||| || |||||||| || ||||||||||| || |||
Sbjct 7343 GCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATG 7284
Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151
||||| | || ||||||||||| || ||||| || ||||| || || | ||| || |||
Sbjct 7283 GTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGA 7224
Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211
|| || || |||||||| || ||||| || || ||| | | ||||| || | ||
Sbjct 7223 GTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTT 7164
Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271
|| | ||||| ||| || | || || || || || ||||||||||
Sbjct 7163 TTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCAT 7104
Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331
|| | | | || ||||| || ||||||||||| | ||||||| | |||| |||
Sbjct 7103 ACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCA 7044
Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391
||||| |||||||| ||| || ||||| | || || || | ||| | || || ||
Sbjct 7043 ACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGT 6984
Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451
|| || | || |||||| || | | || ||||| || || ||||||||||||
Sbjct 6983 TCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGT 6924
Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511
|| | || || || || | || ||||| |||||||| || || || | |||
Sbjct 6923 TCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCA 6864
Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571
||||| || |||||||| ||||| ||||| | || || ||| | ||||| ||||| |
Sbjct 6863 ACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCA 6804
Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624
|| | | ||| || ||||| || ||||| | ||||||||||| ||
Sbjct 6803 ATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGC 6751
>seq50502
Length=11567
Score = 109 bits (120), Expect = 4e-19
Identities = 172/245 (70%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458
|||||||| || || || ||||| || || ||||| |||||||| || |||
Sbjct 5017 TTCAATGCTATTGAAACATTACCGTGTGTTAAAAAAAAAGCCGATTGGGCTTTATCATGG 4958
Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518
|| | |||| | | |||| || |||||| || | | || ||||| | || || ||
Sbjct 4957 ATTGCAAGTAAATCTGCTAATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGA 4898
Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578
| || || |||||| ||||| || || |||||||| || ||||| ||| | |||||
Sbjct 4897 ATTTTCTTTAGTGGAAGTTTTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCT 4838
Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637
||| | || || ||||| || || ||||| || || || | ||||||||||||||
Sbjct 4837 GGTTTAACATTTTCAAATGAATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCA 4778
Query 61638 TGTTT 61642
|||||
Sbjct 4777 TGTTT 4773
Score = 87.8 bits (96), Expect = 1e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 61707 GGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCAT 61766
||| |||| || |||||||||||| | || || ||||| || ||| | || || ||
Sbjct 4533 GGCAGTAAAAATTGAACAGGAATTTTTAACAGAAGCTTTACCAGTCAATTTAATTGGAAT 4474
Query 61767 GAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812
||||||| | ||||||| || |||||||||||||||||||| |||
Sbjct 4473 GAATTGTAAATTAATGTCTCAATATATTGAATTTGTTGCCGATCGT 4428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396922142584160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |