Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq69808 295 5e-75 seq50502 109 4e-19 >seq69808 Length=9325 Score = 295 bits (326), Expect = 5e-75 Identities = 1000/1553 (64%), Gaps = 31/1553 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || |||| ||||| | || || | | ||| ||||| || || Sbjct 8277 ATCAACAGTAAATTGTATAGCATGTGCAGCTGGTTTTGTTCGTAAATAATACATTCCAGT 8218 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | || ||| |||| |||||||| |||| || | ||||||| || || Sbjct 8217 TTTTAAACCTAACTTCCATCCATAAAAATGCATTGATGTTAGTAAACCATAATTTGGTTC 8158 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| ||||| || || ||||||||||| ||| | ||||||||||||||||| Sbjct 8157 AGCTACATGAATATTAAATGATTGACTCTGATCAATGAATGCCCCACGATCTGCAGCCAT 8098 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | || | | | | || || ||||| || || || || | |||| Sbjct 8097 TTGCATT-TGTGTTTTAACTGAAATTTCCCAAACTGTTTTATATAAATCTCGTATTGATT 8039 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 |||| || | ||||| || || | ||||||||| |||||| || ||| ||| Sbjct 8038 TTGGTATATTATCAATTTCTTGTATAGAACCACGATTTGCAATTATTGTATTTTTCATAT 7979 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| | | || | | || || | ||| | |||| | || | Sbjct 7978 CATCATCCCATAAATCAAGTTCTGTTAAATCTTTTAATAAGAAATGATTAACTACAACAA 7919 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || | ||||||||| |||||| || || || || ||||| ||||| Sbjct 7918 ATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGGCTCAAATGATTCGT 7859 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | || |||| |||||| || || ||||| |||||||| || || | ||||| || |||| Sbjct 7858 TATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTC 7799 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATC 65613 | | || | || ||| || | | ||| | ||| ||||| | || ||| | Sbjct 7798 GGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTG 7739 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | | ||||||||| | ||| || | || || | ||||| || Sbjct 7738 TTTTATT--------CCACATATCATATTGAAGTATACCTTGGCTAACTGGTGATCCATC 7687 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | | || || || | | || | || || || | ||| | ||| || | Sbjct 7686 ATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAATGCACCATA 7627 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 |||||| || || || || || |||| | || |||| || || || || || || Sbjct 7626 ATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCATATGGGTA 7567 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || ||| | | ||| | || || | ||||| || |||||||| || || |||||||| Sbjct 7566 ACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGTCGATGACG 7507 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 ||||| || | | || || |||| ||| || ||||| ||||| ||||| |||||| Sbjct 7506 AAAATTTGATTTTTTTGCTTCTGGTAAAGGATAATAATTAATATCAATAATTTTATTCAA 7447 Query 65914 ATTGCGTGTCACCACATGCACGATACGTCGCAA--TTGTTCGAAATCAAAATGTTTAGGA 65971 ||| | ||| || | | | || || | || || |||||| | | |||| Sbjct 7446 ATTTCTTGTAACAATTTTT--GTAACTTCTTTAAGTTTTTTAAAATCATATTTTTTA--- 7392 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 || ||| | | |||||| | | |||| || || | || || ||| Sbjct 7391 ---TC-----TGCTGTA----ACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACA 7344 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 ||||| || || || || | ||| || |||||||| || ||||||||||| || ||| Sbjct 7343 GCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATG 7284 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 ||||| | || ||||||||||| || ||||| || ||||| || || | ||| || ||| Sbjct 7283 GTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATATAACATATATGGA 7224 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 || || || |||||||| || ||||| || || ||| | | ||||| || | || Sbjct 7223 GTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACGTGCTTTAATTGTT 7164 Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 || | ||||| ||| || | || || || || || |||||||||| Sbjct 7163 TTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAAATTTTTCACCCCAT 7104 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || | | | || ||||| || ||||||||||| | ||||||| | |||| ||| Sbjct 7103 ACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCATCAGCTTCA 7044 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 ||||| |||||||| ||| || ||||| | || || || | ||| | || || || Sbjct 7043 ACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTAGCACGATGT 6984 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 || || | || |||||| || | | || ||||| || || |||||||||||| Sbjct 6983 TCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCATGCCATGGT 6924 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || | || || || || | || ||||| |||||||| || || || | ||| Sbjct 6923 TCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACATATCTAGCA 6864 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||||| || |||||||| ||||| ||||| | || || ||| | ||||| ||||| | Sbjct 6863 ACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCATTTGTGCCAGCA 6804 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 || | | ||| || ||||| || ||||| | ||||||||||| || Sbjct 6803 ATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCACCAGC 6751 >seq50502 Length=11567 Score = 109 bits (120), Expect = 4e-19 Identities = 172/245 (70%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || || || ||||| || || ||||| |||||||| || ||| Sbjct 5017 TTCAATGCTATTGAAACATTACCGTGTGTTAAAAAAAAAGCCGATTGGGCTTTATCATGG 4958 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | |||| | | |||| || |||||| || | | || ||||| | || || || Sbjct 4957 ATTGCAAGTAAATCTGCTAATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGGA 4898 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || || |||||| ||||| || || |||||||| || ||||| ||| | ||||| Sbjct 4897 ATTTTCTTTAGTGGAAGTTTTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCCT 4838 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 ||| | || || ||||| || || ||||| || || || | |||||||||||||| Sbjct 4837 GGTTTAACATTTTCAAATGAATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGCA 4778 Query 61638 TGTTT 61642 ||||| Sbjct 4777 TGTTT 4773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 61707 GGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCAT 61766 ||| |||| || |||||||||||| | || || ||||| || ||| | || || || Sbjct 4533 GGCAGTAAAAATTGAACAGGAATTTTTAACAGAAGCTTTACCAGTCAATTTAATTGGAAT 4474 Query 61767 GAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 ||||||| | ||||||| || |||||||||||||||||||| ||| Sbjct 4473 GAATTGTAAATTAATGTCTCAATATATTGAATTTGTTGCCGATCGT 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396922142584160