Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq45851 89.7 2e-13 >seq45851 Length=25406 Score = 89.7 bits (98), Expect = 2e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 2773 GTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACT 2832 |||||||| || || ||||||||||||||| | || |||||| | | |||| | | Sbjct 8283 GTATCACATCGATCTGGTGAAACTGAAGATACTTTTATTGCTGATTTGGTTGTTGGACTT 8224 Query 2833 AACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAAC 2892 | |||||||||||||||| ||| || | ||| |||| ||| | |||||||| || Sbjct 8223 AGTACTGGTCAAATTAAGACTGGTGCACCATGCCGTTCTGAACGTTTGGCTAAATATAAT 8164 Query 2893 CAATTGCTTCGTATCGAAGACCAACTTGG 2921 ||| | | ||||| ||||| || |||| Sbjct 8163 CAAATTTTACGTATTGAAGAAGAAATTGG 8135 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 11/190 (6%) Strand=Plus/Minus Query 1693 GCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTA--CACTG 1750 || ||| || || |||| || || ||||| |||||| ||||||| || |||| ||||| Sbjct 9369 GCTCGTCAAATCTTTGATTCTCGTGGTAATCCAACAGTTGAAGTTGA--TTTAACCACTG 9312 Query 1751 AATCTGGTGCATTC--GGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGA 1808 ||| ||| ||| || || ||| || || |||||||||||||||| ||| || Sbjct 9311 AATTAGGTTTGTTCAGGGCTGCTGTA-----CCATCTGGAGCATCAACTGGTGTACATGA 9257 Query 1809 AGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGC 1868 ||| | ||| | |||||| ||| ||| ||| |||| ||| | ||||||| Sbjct 9256 GGCACTTGAATTGCGTGATAATGAAAAAAACAATTATCATGGTAAAGGTGTTAAAAAAGC 9197 Query 1869 AGTTGATAAC 1878 ||||||| || Sbjct 9196 AGTTGATCAC 9187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155791412082936