Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq30817 136 1e-27 >seq30817 Length=4284 Score = 136 bits (150), Expect = 1e-27 Identities = 194/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 33660 CCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTC 33719 |||||| | || | ||| |||||| | ||| |||||||||||||| | || || || Sbjct 296 CCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAGCCTTTTTTCAGGTATTC 237 Query 33720 ACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTT 33779 || |||| |||||| | ||||| || ||||| || ||||||||||| |||| || Sbjct 236 CCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACG 177 Query 33780 TTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAAC 33839 ||||||| || ||| ||| ||| ||| || || || | || | ||| || || Sbjct 176 CATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCAC 117 Query 33840 AGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGAT 33899 || ||||| || ||||| || || | ||| || || || |||| | |||| | || Sbjct 116 CGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTGCCCTAGGTTACCGATAAGAAT 57 Query 33900 TACTTTATTTACGCCGCGAGTTGCCATTTATTA 33932 ||||||||||||||| | | ||||||||||| Sbjct 56 TACTTTATTTACGCCTCTGCTGGCCATTTATTA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144743327447712