Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_033040.1 Length=9185 Score E Sequences producing significant alignments: (Bits) Value seq129610 118 6e-23 >seq129610 Length=2765 Score = 118 bits (130), Expect = 6e-23 Identities = 261/386 (68%), Gaps = 13/386 (3%) Strand=Plus/Plus Query 4609 TATTTGTTTAAGTGTGATTTGGTAAAATCTGAGCCTTTTGTTCTTTGTGTGGAGGGACAA 4668 ||| | || || |||||||| || |||||||| ||||||||| | ||||| || ||| | Sbjct 59 TATCTATTCAAATGTGATTTAGTTAAATCTGAACCTTTTGTTTTGTGTGTTGAAGGAAAT 118 Query 4669 TCGCAGCTTGGAAAGTCTTTTGCTACATATGACCTTGCTGTTGAGGGCTTG----AGTGA 4724 | |||| || || ||||| |||||||| ||| |||| || ||| ||| | Sbjct 119 ACTGGTGTTGGTAAATCATTTGCAACATATGAT-TTG--GTTGTGGCTTTGTTGAAGTCA 175 Query 4725 AATAGGGGTGAAGGGCAA-TATT---GATTGTGTGTTTACTGTCTCGCCGGGGGTTAAGT 4780 | || | | | ||| || | |||| || || || | | | || | | | Sbjct 176 ATTAATTATCA--GACAACTAATCCAGATTTAGTTTTCACAATACCAGCTGGAAATGACT 233 Query 4781 ATTGGAATGGATATATGGACCAACCGGTTATCTGGTATGACGACTGGTGCAACTTAACAG 4840 ||||||||||||| || ||||||| || |||||||| || ||||| || ||| ||| Sbjct 234 TTTGGAATGGATATTGTGATCAACCGGCAATATGGTATGATGATTGGTGTAATTTAGCAG 293 Query 4841 ATGATGAAACTATGAAAGACCATTTGTCGCAGTTGTATGCTTTGAAGACTTCAGCTCCAT 4900 |||| | || || || | ||| | ||||| ||||| | || |||||||| || | Sbjct 294 ATGAACAGACAATAAAGGCACATATAAGTCAGTTATATGCACTTAAAACTTCAGCACCTT 353 Query 4901 TTAATGTACCAAGAGCGGAACTTGAAAATAAGGAACAGATTGCTGCCCCTAATTTGGTTA 4960 ||||||| ||| |||| ||| | | ||||| ||||| || || || || | | Sbjct 354 TTAATGTTCCACGAGCAGAATTGCATAATAAAGAACAAATAGCAAATCCACATATTATAG 413 Query 4961 TAATGACAACAAATAATCCGTTTCCT 4986 || | || || |||| ||| |||||| Sbjct 414 TATTAACTACTAATATTCCTTTTCCT 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29232897754984