Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_033195.1
Length=9266
Score E
Sequences producing significant alignments: (Bits) Value
seq129610 244 6e-61
>seq129610
Length=2765
Score = 244 bits (270), Expect = 6e-61
Identities = 321/442 (73%), Gaps = 2/442 (0%)
Strand=Plus/Plus
Query 4546 TATTTGTTTAAATGTGATGTTATTAAAACAGAACCTTTTGTTTTGTGTATTGAAGGGGGA 4605
||| | || ||||||||| | ||||| | |||||||||||||||||| |||||||
Sbjct 59 TATCTATTCAAATGTGATTTAGTTAAATCTGAACCTTTTGTTTTGTGTGTTGAAGGAAAT 118
Query 4606 ACAAATGTCGGAAAATCATTTGCCGTTACTGATATAGTTTCATCAATGTTATCTTCTATA 4665
|| ||| || ||||||||||| |||| | ||| | |||| || ||
Sbjct 119 ACTGGTGTTGGTAAATCATTTGCAACATATGATTTGGTTGTGGCTTTGTTGAAGTCAATT 178
Query 4666 AATTATAAAGGAACTAGTGAGGATGTTTTGTTTACTGTAGCAGCAGGAGTGGATTATTGG 4725
|||||| | ||||| | ||| | | || || || |||| ||| || | ||||
Sbjct 179 AATTATCAGACAACTAATCCAGATTTAGTTTTCACAATACCAGCTGGAAATGACTTTTGG 238
Query 4726 AATGGTTATTCTGATCAACCTGCTATAGTATATGATGATTGGTGTAATTTGCGTGATGAG 4785
||||| |||| ||||||||| || ||| |||||||||||||||||||| |||||
Sbjct 239 AATGGATATTGTGATCAACCGGCAATATGGTATGATGATTGGTGTAATTTAGCAGATGAA 298
Query 4786 CAGACTAT-GCGCCAGCATATTAGTCAGTTATATCAATTGAAGACATCAGCACCTTTTAA 4844
||||| || | || ||||| |||||||||||| | | || || ||||||||||||||
Sbjct 299 CAGACAATAAAGGCA-CATATAAGTCAGTTATATGCACTTAAAACTTCAGCACCTTTTAA 357
Query 4845 TATACCACGTGCAGAATTGGAAAATAAAGAACAGATTGCAAGTCCTCAAATTGTGGTGTT 4904
| | ||||| ||||||||| | ||||||||||| || |||| ||| || ||| | || ||
Sbjct 358 TGTTCCACGAGCAGAATTGCATAATAAAGAACAAATAGCAAATCCACATATTATAGTATT 417
Query 4905 ATCTACTAATGTTCCATTCCCTACATCAGCAATTTTTAATTGTCCAGAAGCTGTTTGGAG 4964
| |||||||| |||| || |||| ||| | || | | ||||||||| |||| ||
Sbjct 418 AACTACTAATATTCCTTTTCCTAAATCTCCTATAATAGTGTATCCAGAAGCAGTTTATAG 477
Query 4965 AAGACGAGATATGCTGGTGAAA 4986
|||| ||||| | |||| |||
Sbjct 478 AAGAAGAGATTTATTGGTAAAA 499
Score = 113 bits (124), Expect = 3e-21
Identities = 221/323 (68%), Gaps = 14/323 (4%)
Strand=Plus/Plus
Query 4204 AATGGTTTGAATTCTATTCTGCAATTTTCTAAATCTTTTTTCAGAGCTGTTTCCAATATT 4263
|||||| | |||||||| | ||| || | | | ||||| |||||||| || || |||
Sbjct 2004 AATGGTATAAATTCTATAGTACAAGTTGTAAGAACATTTTTTAGAGCTGTATCAAAGATT 2063
Query 4264 TTTTCATGGTTATTCTCTAAAGCTGATCCTAATGTTTCATTAATGAAAGCATTAAGTTCC 4323
| ||||||| || ||||||||||| ||| ||| ||| |||||||||||
Sbjct 2064 ATAACATGGTTTTTTGAGAAAGCTGATCCAAATATTTGTTTATTGAAAGCATTA------ 2117
Query 4324 CAGGATAAGGAGCTA-ACT-----GAGTTTTTGGAAGAAAGTAATTTATATTTGAATAAC 4377
|| ||| ||| || | | || ||| |||||||| ||||| ||||| |||||
Sbjct 2118 CAAAATAGAGAGGTAGAGTTGGGAGAATTTATGGAAGAAGCAAATTTGTATTTAAATAAT 2177
Query 4378 TTTAACGATAATGATTTTAAACGTCGTGATCTACGAATTCGCTTTCTAAGCACTATAATG 4437
||||| ||||||||||||||| | ||| | ||||| | | | | || ||| |
Sbjct 2178 TTTAATGATAATGATTTTAAAAGAAAGGATATGAGAATTAAATATTTGAATACAATATTA 2237
Query 4438 CGTGCTTTTAAATTGCGTTTAGTGCTTTTACGTATTGCAAATCCCCGTTTGACAGGACAA 4497
| |||| ||||||| | || ||| | || | | || ||||| | || ||| |||
Sbjct 2238 AGAGCTTATAAATTGAGATTGGTGTTATTGCAATTGGCTAATCCACAATTAACAACTCAA 2297
Query 4498 TTATTGCAACAT-TGTAATAAAG 4519
|||| | | | ||||||||||
Sbjct 2298 CTATT-AATCTTGTGTAATAAAG 2319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 29491709069680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |