Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_033195.1 Length=9266 Score E Sequences producing significant alignments: (Bits) Value seq129610 244 6e-61 >seq129610 Length=2765 Score = 244 bits (270), Expect = 6e-61 Identities = 321/442 (73%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 4546 TATTTGTTTAAATGTGATGTTATTAAAACAGAACCTTTTGTTTTGTGTATTGAAGGGGGA 4605 ||| | || ||||||||| | ||||| | |||||||||||||||||| ||||||| Sbjct 59 TATCTATTCAAATGTGATTTAGTTAAATCTGAACCTTTTGTTTTGTGTGTTGAAGGAAAT 118 Query 4606 ACAAATGTCGGAAAATCATTTGCCGTTACTGATATAGTTTCATCAATGTTATCTTCTATA 4665 || ||| || ||||||||||| |||| | ||| | |||| || || Sbjct 119 ACTGGTGTTGGTAAATCATTTGCAACATATGATTTGGTTGTGGCTTTGTTGAAGTCAATT 178 Query 4666 AATTATAAAGGAACTAGTGAGGATGTTTTGTTTACTGTAGCAGCAGGAGTGGATTATTGG 4725 |||||| | ||||| | ||| | | || || || |||| ||| || | |||| Sbjct 179 AATTATCAGACAACTAATCCAGATTTAGTTTTCACAATACCAGCTGGAAATGACTTTTGG 238 Query 4726 AATGGTTATTCTGATCAACCTGCTATAGTATATGATGATTGGTGTAATTTGCGTGATGAG 4785 ||||| |||| ||||||||| || ||| |||||||||||||||||||| ||||| Sbjct 239 AATGGATATTGTGATCAACCGGCAATATGGTATGATGATTGGTGTAATTTAGCAGATGAA 298 Query 4786 CAGACTAT-GCGCCAGCATATTAGTCAGTTATATCAATTGAAGACATCAGCACCTTTTAA 4844 ||||| || | || ||||| |||||||||||| | | || || |||||||||||||| Sbjct 299 CAGACAATAAAGGCA-CATATAAGTCAGTTATATGCACTTAAAACTTCAGCACCTTTTAA 357 Query 4845 TATACCACGTGCAGAATTGGAAAATAAAGAACAGATTGCAAGTCCTCAAATTGTGGTGTT 4904 | | ||||| ||||||||| | ||||||||||| || |||| ||| || ||| | || || Sbjct 358 TGTTCCACGAGCAGAATTGCATAATAAAGAACAAATAGCAAATCCACATATTATAGTATT 417 Query 4905 ATCTACTAATGTTCCATTCCCTACATCAGCAATTTTTAATTGTCCAGAAGCTGTTTGGAG 4964 | |||||||| |||| || |||| ||| | || | | ||||||||| |||| || Sbjct 418 AACTACTAATATTCCTTTTCCTAAATCTCCTATAATAGTGTATCCAGAAGCAGTTTATAG 477 Query 4965 AAGACGAGATATGCTGGTGAAA 4986 |||| ||||| | |||| ||| Sbjct 478 AAGAAGAGATTTATTGGTAAAA 499 Score = 113 bits (124), Expect = 3e-21 Identities = 221/323 (68%), Gaps = 14/323 (4%) Strand=Plus/Plus Query 4204 AATGGTTTGAATTCTATTCTGCAATTTTCTAAATCTTTTTTCAGAGCTGTTTCCAATATT 4263 |||||| | |||||||| | ||| || | | | ||||| |||||||| || || ||| Sbjct 2004 AATGGTATAAATTCTATAGTACAAGTTGTAAGAACATTTTTTAGAGCTGTATCAAAGATT 2063 Query 4264 TTTTCATGGTTATTCTCTAAAGCTGATCCTAATGTTTCATTAATGAAAGCATTAAGTTCC 4323 | ||||||| || ||||||||||| ||| ||| ||| ||||||||||| Sbjct 2064 ATAACATGGTTTTTTGAGAAAGCTGATCCAAATATTTGTTTATTGAAAGCATTA------ 2117 Query 4324 CAGGATAAGGAGCTA-ACT-----GAGTTTTTGGAAGAAAGTAATTTATATTTGAATAAC 4377 || ||| ||| || | | || ||| |||||||| ||||| ||||| ||||| Sbjct 2118 CAAAATAGAGAGGTAGAGTTGGGAGAATTTATGGAAGAAGCAAATTTGTATTTAAATAAT 2177 Query 4378 TTTAACGATAATGATTTTAAACGTCGTGATCTACGAATTCGCTTTCTAAGCACTATAATG 4437 ||||| ||||||||||||||| | ||| | ||||| | | | | || ||| | Sbjct 2178 TTTAATGATAATGATTTTAAAAGAAAGGATATGAGAATTAAATATTTGAATACAATATTA 2237 Query 4438 CGTGCTTTTAAATTGCGTTTAGTGCTTTTACGTATTGCAAATCCCCGTTTGACAGGACAA 4497 | |||| ||||||| | || ||| | || | | || ||||| | || ||| ||| Sbjct 2238 AGAGCTTATAAATTGAGATTGGTGTTATTGCAATTGGCTAATCCACAATTAACAACTCAA 2297 Query 4498 TTATTGCAACAT-TGTAATAAAG 4519 |||| | | | |||||||||| Sbjct 2298 CTATT-AATCTTGTGTAATAAAG 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29491709069680