Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq2301 185 2e-44 seq2773 161 2e-37 seq811 132 9e-29 >seq2301 Length=88450 Score = 185 bits (204), Expect = 2e-44 Identities = 239/322 (74%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 17 GTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG-TGAC 75 |||||||||| |||||| ||| | || ||||| | ||||||||| | || || |||| Sbjct 2855 GTGAAATAGATCCTGAAACCGTGTGCTTACAATCCGTCGGAGCCTCCTTGTTGGGGTGAC 2796 Query 76 GGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTC 135 ||||||||||||| | ||||||||| ||||||||| ||| |||||||||| | | Sbjct 2795 GGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGCTCAGTGGCGAGGTTAACC-CGTG 2737 Query 136 AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG-ACGAGTTGGTGGCGCTAGA 194 || | ||||| || ||||||||| | || |||||| | |||| | ||| ||||| Sbjct 2736 TGG---GGAAGCCGTAGCGAAAGCGAGTCCGAATAGGGCGTATGAGTCGCTGGGTCTAGA 2680 Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG--CGTGATGGAG 252 | |||| | |||||||| ||| | |||||||||| ||||| | | |||| ||||| Sbjct 2679 CCCGAAGCGGAGTGATCTATCCATGGCCAGGTTGAAG-CGCGGGTAAGACCGTG-TGGAG 2622 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 ||||||||| | ||| |||| | |||||| | || |||||||||||||||| Sbjct 2621 GACCGAACCCACTTAGGTTAAAAACTGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCA 2562 Query 313 ATCAAACTGGGAAATAGCTCGT 334 |||||||| | |||||| || Sbjct 2561 ATCAAACTCCGTGATAGCTGGT 2540 >seq2773 Length=113092 Score = 161 bits (178), Expect = 2e-37 Identities = 248/349 (71%), Gaps = 21/349 (6%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| |||| ||||| | ||| ||||| Sbjct 70524 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGCGCTTACAATCCGTCAGAGCC 70582 Query 61 GAGTGA----TTCGGTG---------ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT 107 ||| ||||||| | ||||||||||||| | ||||||||| ||||| Sbjct 70583 T-GTGCACATTTCGGTGTGGTGGGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTC 70641 Query 108 AGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTA 167 ||| || |||||||||| | | || | |||||| || ||||||||| | | Sbjct 70642 AGTGGTATGTGGCGAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCCGA 70697 Query 168 ACAGGGCGACG--AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGG 225 | ||||||| ||| | || || ||| |||| | |||||||||||| | |||| Sbjct 70698 ATAGGGCGAATTTAGTCGCATGCTCTGGACCCGAAGCGGAGTGATCTACCCATGGCCAGG 70757 Query 226 TTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGA 285 ||||| |||||| ||| |||||| ||||||| | |||||||| | ||| Sbjct 70758 GTGAAGCGACGGTAAGACGTCGTGGAGGCCCGAACCCACTTAGGTTGAAAACTGAGGGGA 70817 Query 286 TGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||| | | ||||||||||||||||||||||||||| | |||||| || Sbjct 70818 TGAGTTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGT 70866 >seq811 Length=1020237 Score = 132 bits (146), Expect = 9e-29 Identities = 190/265 (72%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| |||||||||||||| | | ||||||| || | ||| || ||||| Sbjct 846755 GTGACAGCGTACCTTTTGCATAATGGGTCAGCGAGTTAATC-TATGAAGCAAGCTTAAG- 846812 Query 131 GCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | || || ||| || || |||||| || || || |||||| |||| | Sbjct 846813 ----CCGGTAGGTGTAGGCGTAGCGAAAGCAAGTCTGAATAGGGCGTTTAGTTTTATGGA 846868 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| || || ||| |||||| ||||| | | || Sbjct 846869 TTAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTATGGTAAAACATACTG 846928 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||| || || |||| || || | |||||| | | | ||||||||||||| Sbjct 846929 AAGGATCGAACCAGTTAATGTTGCAACATTATTGGATGAGTTGTGATTAGGGGTGAAAGG 846988 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| ||||||||||| || Sbjct 846989 CCAATCAAACCGGGAAATAGCTGGT 847013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972202992640