Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq751 187 5e-45 seq4329 183 6e-44 seq14536 181 2e-43 seq73 131 3e-28 seq4146 129 1e-27 seq4582 127 4e-27 seq538 127 4e-27 seq108 105 1e-20 seq4437 91.5 3e-16 seq986 89.7 9e-16 >seq751 Length=886750 Score = 187 bits (206), Expect = 5e-45 Identities = 218/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 551221 TGCTCTTGACTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 551162 Query 100 AAAGCAGGCC----TTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| | ||| |||||| | |||||||||||| ||||||||| | ||| Sbjct 551161 AAAGCAGGCTGATTTCTGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACTT-CGG 551103 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| || | ||| ||||||||||||||||| || |||||| | Sbjct 551102 TTCTATTTTGTTGGTTTTAAGAATCCGAAGTAATGATTAATAGGGACAGGCGGGGGCATT 551043 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC-TAACTACTGCGAAAG 272 ||||| || |||||||| |||||||||| ||||| || ||| ||||||| Sbjct 551042 CGTATTGCGACGTTAGAGGTGAGATTCTTGGATCGTCGCAAGACGTACCTA-AGCGAAAG 550984 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||| || ||||||| ||||||||||||| || Sbjct 550983 CATTTGCCAAGTATGTCCTCGTTAATCA-AGAACGAAAGTTAGAGG 550939 >seq4329 Length=81254 Score = 183 bits (202), Expect = 6e-44 Identities = 217/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 40957 TGCTCTTGACTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 40898 Query 100 AAAGCAGGCC----TTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| | ||| |||||| | |||||||||||| ||||||||| | ||| Sbjct 40897 AAAGCAGGCTGATTTCTGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACTT-CGG 40839 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| || | ||| ||||||||||||||||| || |||||| | Sbjct 40838 TTCTATTTTGTTGGTTTTAAGAATCCGAAGTAATGATTAATAGGGACAGGCGGGGGCATT 40779 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA-CTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| |||| || ||| ||||||| Sbjct 40778 CGTATTTCGACGTTAGAGGTGAAATTCTTGGATCGTCCCAAGAGGTACCTA-AGCGAAAG 40720 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| |||| | ||||||| ||||||||||||| || Sbjct 40719 CATTTGCCAAGTATGTCCTTGTTAATCA-AGAACGAAAGTTAGAGG 40675 >seq14536 Length=10445 Score = 181 bits (200), Expect = 2e-43 Identities = 218/287 (76%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 6308 TGCTCTTGACTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 6249 Query 100 AAAGCAGGCC----TTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| | ||| |||||| | |||||||||||| ||||||||| | | Sbjct 6248 AAAGCAGGCTGATTTCTGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACTTTAG- 6190 Query 155 TTCTATTTTGTTGGTTTCTAGGA--CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| || || ||| |||||||||||| ||||||| |||||| | Sbjct 6189 TTCTATTTTGTTGGTTT-TAAGATTCCGAAGTAATGATTAATGGGGATAGGCGGGGGCAT 6131 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC-TAACTACTGCGAAA 271 ||||| || ||||||||||||||||||| ||||| || ||| |||||| Sbjct 6130 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGTACCTA-AGCGAAA 6072 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || ||||| |||| || ||||||| ||||||||||||| || Sbjct 6071 GCATTTGCCAAGTATGTCCTCGTTAATCA-AGAACGAAAGTTAGAGG 6026 >seq73 Length=3477260 Score = 131 bits (144), Expect = 3e-28 Identities = 137/176 (78%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| | || ||||||||||| |||||||||| | Sbjct 478689 TGCTCTTGACTGAGTGTCGAGATGGGCCGGCACGTTTACTTTGAACCAATTAGAGTGCTT 478630 Query 100 AAAGCAGGC----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| | ||| |||||| | |||||||||||| ||||||||| | ||| Sbjct 478629 AAAGCAGGCTGATTTCTGCCTGAATACTGTGTGCATGGAATAATGGAATAGGAC-TTCGG 478571 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||||||| || | ||| ||||||||||||||||| || |||||| Sbjct 478570 TTCTATTTTGTTGGTTTTAAGAATCCGAAGTAATGATTAATAGGGACAGGCGGGGG 478515 >seq4146 Length=38250 Score = 129 bits (142), Expect = 1e-27 Identities = 194/262 (74%), Gaps = 13/262 (5%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--CTTTGCTC--GAAT 120 ||||| | ||||||||||| |||||||| || | | ||||||| ||| || ||| Sbjct 16771 GCCAGCGCGTTTACTTTGAACAAATTAGAATGCTTAGAGCAGGCTGATTTCTTCCTAAAT 16830 Query 121 AC-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-C 178 || | ||| ||||||| ||||||||| | |||||||||||||||||||| || | Sbjct 16831 ACTGTGTGCACTGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTTTAAGAATG 16889 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||| || |||||| | ||||| || ||| |||| || Sbjct 16890 CGAACTAATGATTAAT-GGGGCAGGCGGGGGCATTCGTATTGCGACGTTAGATGTGACAT 16948 Query 239 TCTTGGATTTATTG-AAGA-CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 ||||||| | |||| || ||| ||| | ||||||| || ||||| |||| || ||| Sbjct 16949 TCTTGGA-TCATTGCCCGACCTACCTAAT-CGAAAGCATTTGCCAAGTATGTCCTCGTTA 17006 Query 297 ATCAGTGAACGAAAGTTAGGGG 318 |||| ||||||||||||| || Sbjct 17007 ATCA-AGAACGAAAGTTAGAGG 17027 >seq4582 Length=50837 Score = 127 bits (140), Expect = 4e-27 Identities = 158/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 44798 TGCTCTTGACTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTT 44857 Query 100 AAAGCAGGC----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGG 154 || |||||| | ||| |||||| | |||||||||||| | ||||| | | ||| Sbjct 44858 AAGGCAGGCTGATTTCTGCCTGAATACTGTGTGCATGGAATAATGGGATAGGGC-TTCGG 44916 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| || | ||| |||| | ||||||||| || |||| | | Sbjct 44917 TTCTATTTTGTTGGTTTTAAGAATCCGAAATAATAAGTAATAGGGACAGGCGGGAGCATT 44976 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||| || |||||||||||||||||| Sbjct 44977 CGTATTACGACGTTAGAGGTGAAATTCTTGGA 45008 >seq538 Length=325624 Score = 127 bits (140), Expect = 4e-27 Identities = 193/262 (74%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--CTTTGCTC--GAAT 120 ||||| | ||||||||||| |||||||| || | ||||||||| ||| || | || Sbjct 17676 GCCAGCGCGTTTACTTTGAACAAATTAGAATGCTTAAAGCAGGCTGATTTCTTCCTGTAT 17617 Query 121 AC-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GAC 178 || | ||| |||||||| ||||||||| | |||||| ||||||||| ||| || | Sbjct 17616 ACTGTGTGCACGGAATAATGGAATAGGAC-TTCGGTTCAATTTTGTTGATTTTAAGAGTG 17558 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || |||||||||||||||| | ||||| | ||||| || ||||||| || Sbjct 17557 CGAACTAATGATTAATAGGGACGGGTGGGGGCATTCGTATTGCGACGTTAGAGGTGTCAT 17498 Query 239 TCTTGGATTTATTG-AAGAC-TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 ||||||| | || | ||||| || ||| |||||||| || ||| |||| || ||| Sbjct 17497 TCTTGGA-TCATCGCAAGACATACCTA-AGCGAAAGCATTTGAAAAGTATGTCCTCGTTA 17440 Query 297 ATCAGTGAACGAAAGTTAGGGG 318 |||| ||||||||||||| || Sbjct 17439 ATCA-AGAACGAAAGTTAGAGG 17419 >seq108 Length=2308914 Score = 105 bits (116), Expect = 1e-20 Identities = 126/167 (75%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 86 AAATTAGAGTGTTCAAAGCAGGCC----TTTGCTCGAATACATTA-GCATGGAATAATAG 140 ||||||||||| | |||||||| | |||| |||||| | ||||| |||||| | Sbjct 2226342 AAATTAGAGTGCTTTAAGCAGGCTGATTTCTGCTTGAATACTGTGTGCATGAAATAATGG 2226401 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGA 199 |||||||| | |||||||||||||||||||| || | ||| ||||||||||||| | | Sbjct 2226402 AATAGGACTT-CGGTTCTATTTTGTTGGTTTTAAGAATCCGAAGTAATGATTAATAAGTA 2226460 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 || | || | | ||||| || |||| |||||||||||||| Sbjct 2226461 CAGGCAGGAGCATTCGTATTGCGACGTTAGAGATGAAATTCTTGGAT 2226507 >seq4437 Length=75255 Score = 91.5 bits (100), Expect = 3e-16 Identities = 163/228 (71%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCA----GGCCTTTGCTCGAATA-CATT 125 |||||||||||||| |||||||||||| |||||| || | ||| ||||| || Sbjct 49026 ACTTTTACTTTGAACGAATTAGAGTGTTTAAAGCAGACTGGTTTCTGCATGAATAGTATA 49085 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGT 184 ||||||||||||| ||| ||| || |||||||||| || |||| || | || || Sbjct 49086 AGCATGGAATAATGGAACCGGA-GTTTGGTTCTATTTCCTTAGTTT-AAGTATCCTAAGT 49143 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAA---TTGTCAGAGGTGAAATTCT 241 ||||||||||||| | || | ||| | || | || || ||| ||||||||| Sbjct 49144 AATGATTAATAGGAACAGGTGAGGGCATTCGT-TAGAAGCGACGTTAGAAATGAAATTCT 49202 Query 242 TGGATTTATTGAAGAC-TAACTACTGCGAAAGCGTTCACCAAGGATGT 288 ||||| ||||| |||||| |||||||| | ||||| |||| Sbjct 49203 TGGATCGTCGTAAGACGTAACTA-AGCGAAAGCATGGGCCAAGTATGT 49249 >seq986 Length=306502 Score = 89.7 bits (98), Expect = 9e-16 Identities = 132/177 (75%), Gaps = 10/177 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGT-GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| | || |||| | || || |||||||| ||||||||||| | |||||||| | Sbjct 235774 TGCTCTTAATTGAGTGTCGACGTGG-GCCAGGACCTTTACTTTGAACCATTTAGAGTGAT 235716 Query 99 CAAAGCAGGC--CTT--TGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 || |||||| || ||| ||| || | |||||||| ||| |||||||| | || Sbjct 235715 TAACGCAGGCTGATTCCTGCCTGAACACTGTCTGCATGGAACAATTGAATAGGA-ATTCG 235657 Query 154 GTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 |||| || |||||| || || | ||| |||||||||||| |||| || |||||| Sbjct 235656 ATTCT-TTCTGTTGGCTTAAAGAATCCGAAGTAATGATTAATGGGGACAGGCGGGGG 235601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914638341760