Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq401 140 1e-30 seq3965 123 1e-25 seq1549 118 4e-24 seq247 118 4e-24 seq621 113 2e-22 seq69 104 1e-19 >seq401 Length=891218 Score = 140 bits (154), Expect = 1e-30 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 874774 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 874715 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| |||||||||||||||||| | ||||| Sbjct 874714 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGT 874655 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 874654 ATAGGGGCGA 874645 >seq3965 Length=47759 Score = 123 bits (136), Expect = 1e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||| ||| || ||| |||| ||| |||||| ||| | Sbjct 16414 TTGGGACCCGAAAGATGGTGAACTGTGCATGGCCAGGACGAAGTCAGGGGAAACCCTGAT 16355 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||| |||| ||||| || ||||||||||||||| | ||||||||||||||| Sbjct 16354 GAAGGTTCGTAGCGATTCTGACGAGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 16297 >seq1549 Length=210816 Score = 118 bits (130), Expect = 4e-24 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| || |||||| | | ||||| ||||||| Sbjct 92393 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 92334 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 92333 AT-GACCACGAGACCGATAGAAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 92275 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 92274 GAGAGAGTTCAAGAGTACGTGAAA 92251 >seq247 Length=1148213 Score = 118 bits (130), Expect = 4e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| ||| |||| ||| |||||| ||| |||||| || Sbjct 562908 AAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGGGGAAACCCTGATGGAGGTCCGT 562849 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 562848 AGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 562801 >seq621 Length=780695 Score = 113 bits (124), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| |||| ||| || |||||| |||| || |||||| | | ||||| ||||||||| Sbjct 658529 TCGGGTTGCTTGAGAGTGCAGCCCTAAGCAGGTGGTAAACTCCATCTAAGGCTAAATAT- 658587 Query 103 GGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAG 161 | ||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | || Sbjct 658588 GACCACGAGACCGATAGAAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAGAG 658647 Query 162 AGAGTTAAAAAGCACGTGAAA 182 |||||| || || |||||||| Sbjct 658648 AGAGTTCAAGAGTACGTGAAA 658668 >seq69 Length=3313069 Score = 104 bits (114), Expect = 1e-19 Identities = 89/110 (81%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 ||||||||| |||||||||| ||| |||| ||| |||||| ||| |||||| | Sbjct 2914281 CGAAAGATG----ACTATGCCTGGCCAGGACGAAGTCAGGGGAAACCCTGATGGAGGTCC 2914336 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 2914337 GTAGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 2914386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078683613500