Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2301 82.4 7e-14 seq811 78.8 9e-13 >seq2301 Length=88450 Score = 82.4 bits (90), Expect = 7e-14 Identities = 90/118 (76%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||||||||||| ||| | ||| ||||||||||||| || |||||| ||| Sbjct 3399 GGCACACGGTGGATGCCTTGGCACCAGGAACCGAAGAAGGACGTAGGAATCTGCGATAAG 3340 Query 61 CTACGGGGATTGG---CACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 | |||||| | | || ||| |||||||| ||| ||||||||||| |||||| Sbjct 3339 CCTCGGGGAGTCGATAACCAGACG--TTGATCCGAGGATTTCCGAATGGGGAAACCCG 3284 >seq811 Length=1020237 Score = 78.8 bits (86), Expect = 9e-13 Identities = 129/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Plus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| ||| | ||||||| |||||||||| | ||||||| ||||| ||| | Sbjct 846235 TGGATGCCTTGGCGTTAAGAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTGTGGGAA 846294 Query 70 -TTGGCA-CATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGA-TATATTGG-- 124 ||| || || | |||||||| |||| ||||||||||| ||||| | || || | Sbjct 846295 ATTGTCAGCAAATT--TTGATCCGCAGATTTCCGAATGGGGAAACCCAACTAGCTTAGCT 846352 Query 125 AG---ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||||| ||| || | | || ||| ||| ||||||||| ||||||||| Sbjct 846353 AGTTATTATATATTAAGTATA----TAAAGCAAACTTGGTGAACTGAAATATCTAAGTA 846407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476516531970