Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2773 300 2e-79 seq2301 241 2e-61 seq811 150 2e-34 seq2167 102 1e-19 >seq2773 Length=113092 Score = 300 bits (332), Expect = 2e-79 Identities = 219/253 (87%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 72039 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTAC-GACTTCGCAC 71981 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||||||||||||||||||| | || ||||||||||| |||||||||| Sbjct 71980 GGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGACCCACACCAGCTCA 71921 Query 121 ACACGT-----CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | | | |||||||||| || ||||||||||||||||||||||| ||||||| Sbjct 71920 CAAGGCAAAAGCCATCACCAGCAGGGGTCCCCCTTCTCCCGAAGTTACGGGGGCATTTTG 71861 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 |||| ||||||||||| ||||| | ||| |||||| |||||||||||||||||||||||| Sbjct 71860 CCGAGTTCCTTAACCATAGTTCTCTCGATCGCCTTGGTATTCTCTACCTGACCACCTGTG 71801 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 71800 TCGGTTTGGGGTA 71788 >seq2301 Length=88450 Score = 241 bits (266), Expect = 2e-61 Identities = 206/251 (82%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| | ||||| |||||||||||||||||||||||||||||| || | |||||||| Sbjct 1377 CTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTATTGCTA-CTTCGCAC 1435 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC---CACCAGC 117 ||||||||||||||| |||||||||||||| | || |||||||| || | | ||| Sbjct 1436 GGACCTGTGTTTTTAATAAACAGTCGCTTCTCCCTGGTCTCTGCGGCCGGTCACGCTAGC 1495 Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | | | ||||| || ||| ||||||||||||||||||||||| ||||||||| Sbjct 1496 CCGCAAGGGGCTTCACGCTCAC-GGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCC 1554 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 |||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||| ||| Sbjct 1555 GAATTCCTTAGCCACGATTCACTCGATCGCCTTAGTATTCTCTACCTGACCACCTGAGTC 1614 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 1615 GGTTTGGGGTA 1625 >seq811 Length=1020237 Score = 150 bits (166), Expect = 2e-34 Identities = 187/251 (75%), Gaps = 20/251 (8%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| || ||||| ||| || ||| Sbjct 847952 TTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTA-CGTGTTTGCAGA 847894 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||||||||||||||||| | | ||||| | || ||||| |||| Sbjct 847893 GTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTG------CCACCTACTCA- 847841 Query 122 CACGTCGTTCACC----AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | ||| ||| |||| || ||||||| |||||||||| || | |||||| Sbjct 847840 ----TAGTT-ACCTAAAAGCA--GGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCC 847788 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| | || ||| | ||| ||||||||| |||||| ||||| ||||| Sbjct 847787 GAGTTCCTTCAACATCATTCTTTC-AACACCTTAGTATACTCTACTCATCCACCAGTGTC 847729 Query 238 GGTTTACGGTA 248 ||||||||||| Sbjct 847728 GGTTTACGGTA 847718 >seq2167 Length=120157 Score = 102 bits (112), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 ||||||||||||| || ||||| ||| || | | ||| ||| | |||||||||||| | Sbjct 65483 GGGCAGGCGTCAGACCCTATACTTCGTCT-ATTGACTTTGCAGAGCCCTGTGTTTTTAAT 65425 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 ||| ||||||| || || | | ||| |||| || | || | || Sbjct 65424 AAAAAGTCGCTATCCCCTGGTTTGTGC---CACCTATAGATG-----GTTGCCCATTTAT 65373 Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || | || || ||||||||||||||| | | |||||| | |||||| | || |||| Sbjct 65372 AG-GTCATCC-TTCTCCCGAAGTTACAGATGTAATTTGCCTAGTTCCTTCAGCATCGTTC 65315 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | | ||||| |||| ||||||||| ||||||||||||||||| |||| Sbjct 65314 TCTCAAGCGCCTAGGTATACTCTACCTGTCCACCTGTGTCGGTTTAGGGTA 65264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693987164010