Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq811 129 6e-28 seq2773 89.7 5e-16 seq2301 82.4 7e-14 seq2167 75.2 1e-11 >seq811 Length=1020237 Score = 129 bits (142), Expect = 6e-28 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||| ||| Sbjct 847868 GCGACTGTTTACTAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGGTCTGA 847927 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAAT 153 |||||||||||||| ||||||||||| Sbjct 847928 CGCCTGCCCGGTGCTGGAAGGTTAAT 847953 >seq2773 Length=113092 Score = 89.7 bits (98), Expect = 5e-16 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34 GTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCAC 93 || |||| || ||||| ||| ||||| | ||||||||||| ||||||||||| | Sbjct 71920 GTGAGCTGGTGTGGGTCGCAGAGACCAGTGAGAAGCGACTGTTTACTAAAAACACAGGTC 71979 Query 94 TCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || || ||| || ||||| || ||||||||||||||||| |||||||||| Sbjct 71980 CGTGCGAAGTCGTAAGACGATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAA 72038 >seq2301 Length=88450 Score = 82.4 bits (90), Expect = 7e-14 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 45 CCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACAC 104 |||| || ||| |||||| | ||||||||||||||||||||||| | ||| || Sbjct 1485 CCGGCCGCAGAGACCAGGGAGAAGCGACTGTTTATTAAAAACACAGGTCCGTGCGAAGTA 1426 Query 105 GAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | || || ||||| || ||||||||||||||||| |||| ||||| Sbjct 1425 GCAATACGATGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAA 1378 >seq2167 Length=120157 Score = 75.2 bits (82), Expect = 1e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||| |||||||||||||||| ||||||||| | | || || ||||||||| ||| Sbjct 65415 GCGACTTTTTATTAAAAACACAGGGCTCTGCAAAGTCAATAGACGAAGTATAGGGTCTGA 65474 Query 128 CGCCTGCCC 136 ||||||||| Sbjct 65475 CGCCTGCCC 65483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476516531970