Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2773 306 9e-81 seq2301 291 2e-76 seq811 291 2e-76 seq2167 93.3 1e-16 >seq2773 Length=113092 Score = 306 bits (338), Expect = 9e-81 Identities = 322/424 (76%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || | | ||||||| | |||||| ||| |||||||| | ||||| Sbjct 72229 GCATCTTTACTCGTAATGCAATTTCGCCGAGTCTATGGTTGAGACAGCTGAGAAGTCGTT 72170 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 72169 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 72110 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC---------GTTAGCT 183 | ||||| ||||||||||| ||||||| || |||||||| | | ||| Sbjct 72109 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGCTTCGCCACCACAAGGGTGGCT 72050 Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||| | |||||||||| ||||||||||||||||| || ||||| || ||| || Sbjct 72049 GACCGGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTACG 71990 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 || ||| | ||||||||||| ||||||||||| | ||||| ||| ||||| | Sbjct 71989 ACTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGACCCAC 71930 Query 304 ATGAGCTTACGGAGC-AAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGT 362 | |||| || || || || ||||| || || | ||||||||||||||||||| Sbjct 71929 ACCAGCTCACAAGGCAAAAGCCATCACCAGCAGGGGTCCCCCTTCTCCCGAAGTTACGGG 71870 Query 363 GCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAA 422 | | ||||||| |||||||| || ||||||||| | ||||||||||||||||||| | Sbjct 71869 GGCATTTTGCCGAGTTCCTTAACCATAGTTCTCTCGATCGCCTTGGTATTCTCTACCTGA 71810 Query 423 CCAC 426 |||| Sbjct 71809 CCAC 71806 >seq2301 Length=88450 Score = 291 bits (322), Expect = 2e-76 Identities = 322/419 (77%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGCGCCGCCATCGT 71 ||||||| || | | ||||||| | |||| ||| || ||||||| | | |||| Sbjct 1194 GCATCTTTACTCGTAGTGCAATTTCGCCGAGT-TCGCGGCTGAGACAGTGGAGAAGTCGT 1252 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1253 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTT 1312 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA--GCTAACCCC 189 || ||||| ||||||||||| || |||| | ||||||||| ||| |||||||| Sbjct 1313 ATAGTTACCACCGCCGTTTACTGGCGCTTAAGTTCTGAGCTTCGCCTTACGGCTAACCCG 1372 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | ||||| |||| ||||||||||||||||| || ||||| || || | || | Sbjct 1373 TCCCCTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTATTGCTACTTCG 1432 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 || | ||||||||||||||||||||||| | |||||| ||| || |||| | | Sbjct 1433 CACGGACCTGTGTTTTTAATAAACAGTCGCTTCTCCCTGGTCTCTGCGGCCGG--TCACG 1490 Query 310 TTACGGAGCAA-GTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || |||| | |||||| |||| |||| | ||||||||||||||||||| | | || Sbjct 1491 CTAGCCCGCAAGGGGCTTCACGCTCA-CGGCCCCCCTTCTCCCGAAGTTACGGGGGCATT 1549 Query 369 TTGCCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| | |||||| || ||| ||| ||| | |||||| |||||||||||| ||||| Sbjct 1550 TTGCCGAATTCCTTAGCCACGA-TTCACTCGATCGCCTTAGTATTCTCTACCTGACCAC 1607 >seq811 Length=1020237 Score = 291 bits (322), Expect = 2e-76 Identities = 232/279 (83%), Gaps = 9/279 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| | |||||| ||| | || ||||||||| |||| | ||||||||| Sbjct 848137 CGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAATGATGTTGGAGACAGT 848078 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 848077 GGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 848018 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 |||||||||| | ||||||||||||||||||| |||||||| || ||||||| || Sbjct 848017 TTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGCTT-GC---- 847963 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || | | ||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 847962 ----ACTCTTCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTT 847907 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||||||| ||||||||||| ||||||||||| Sbjct 847906 ACGTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 847868 >seq2167 Length=120157 Score = 93.3 bits (102), Expect = 1e-16 Identities = 145/209 (69%), Gaps = 14/209 (7%) Strand=Plus/Minus Query 211 GGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATA 270 |||||||||||| ||||||||| || || | | ||||||||| |||||||||||||| Sbjct 65483 GGGCAGGCGTCAGACCCTATACTTCGTCTATTGACTTTGCAGAGCCCTGTGTTTTTAATA 65424 Query 271 AACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACC 330 || |||||| |||||| | | | ||| | | || | || | Sbjct 65423 AAAAGTCGCTATCCCCTGGTTTGTGCCACCTATAGATGGTTGC---------CCAT---- 65377 Query 331 CTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAG 390 | | || ||||||||||||||||| | |||||||||||||||| | | Sbjct 65376 -TTATAGGTCATCCTTCTCCCGAAGTTACAGATGTAATTTGCCTAGTTCCTTCAGCATCG 65318 Query 391 TTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||||||||||| ||||| ||||||| Sbjct 65317 TTCTCTCAAGCGCCTAGGTATACTCTACC 65289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260026247040