Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2773 313 5e-83 seq2301 304 3e-80 seq811 289 6e-76 seq2167 75.2 2e-11 >seq2773 Length=113092 Score = 313 bits (346), Expect = 5e-83 Identities = 303/393 (77%), Gaps = 35/393 (9%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| |||||||||| |||||||||| || ||||| Sbjct 72229 GCATCTTTACTCGTAATGCAATTTCGCCGAGTCTATGGTTGAGACAGCTGAGAAGTCGTT 72170 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 72169 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 72110 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-------ATTGCT--CT 177 ||||||| ||||||||||||||||||||| ||| | |||||| | | | || Sbjct 72109 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCAGCTTCGCCACCACAAGGGTGGCT 72050 Query 178 AACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 || | ||| |||||||||||||||||||||||||||||| | ||||||||||||| || Sbjct 72049 GACCGGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTACG 71990 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC--- 294 |||| ||| |||||||||||| |||||||||||||| || |||||||| || Sbjct 71989 ACTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCTCACTGGTCTCTGCGACCCAC 71930 Query 295 ------------------TGTCAT----AG-ACAGGCACCCCTTCTCCCTAAGTTACGGG 331 | ||| || | || ||||||||||| |||||||||| Sbjct 71929 ACCAGCTCACAAGGCAAAAGCCATCACCAGCAGGGGTCCCCCTTCTCCCGAAGTTACGGG 71870 Query 332 GTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 | ||||||||||||||||||||| ||||||||| Sbjct 71869 GGCATTTTGCCGAGTTCCTTAACCATAGTTCTC 71837 >seq2301 Length=88450 Score = 304 bits (336), Expect = 3e-80 Identities = 289/371 (78%), Gaps = 25/371 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| |||||| | |||||||||| || ||||| Sbjct 1194 GCATCTTTACTCGTAGTGCAATTTCGCCGAGTTCGCGGCTGAGACAGTGGAGAAGTCGTT 1253 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1254 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 1313 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184 ||||||| |||||||||||||| |||||||||| |||||| || | ||||| | Sbjct 1314 TAGTTACCACCGCCGTTTACTGGCGCTTAAGTTCTGAGCTTCGCCTTACGGCTAACCCGT 1373 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 ||||||||| ||||||||||||||||||||||| | |||||||||| |||| |||| || Sbjct 1374 CCCCTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTATTGCTACTTCGC 1433 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA---TA 301 | |||||||||||| ||||||||||||| ||| ||||||||||| |||| || Sbjct 1434 ACGGACCTGTGTTTTTAATAAACAGTCGCTTCTCCCTGGTCTCTGCGGCCGGTCACGCTA 1493 Query 302 GAC--------------------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 | | ||| ||||||||||| ||||||||||| |||||||| Sbjct 1494 GCCCGCAAGGGGCTTCACGCTCACGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGC 1553 Query 342 CGAGTTCCTTA 352 ||| ||||||| Sbjct 1554 CGAATTCCTTA 1564 >seq811 Length=1020237 Score = 289 bits (320), Expect = 6e-76 Identities = 285/367 (78%), Gaps = 21/367 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||| ||| |||| | ||||||| | || || | ||||||||| || Sbjct 848131 TACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAATGATGTTGGAGACAGTGGAGAA 848072 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848071 ATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 848012 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| | |||||||||||||||||||||||||| | |||| |||| | |||| Sbjct 848011 CCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGCTTGCA---CTCT--- 847958 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||| ||||||| || ||| || | Sbjct 847957 ---TCCTATTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTCCACTTACGTGT 847901 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCA 299 | ||||| ||||||||||| ||||||||||||| |||||| | ||| ||| ||| Sbjct 847900 TTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCTACTCCCTATTTTGTGCCACCTACTCA 847841 Query 300 TAG----------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 ||| |||| ||||||| || ||||||| || | ||||||||||||| Sbjct 847840 TAGTTACCTAAAAGCAGGTTACCCTTCTTCCGAAGTTACAGGTATAATTTGCCGAGTTCC 847781 Query 350 TT-AACA 355 || |||| Sbjct 847780 TTCAACA 847774 >seq2167 Length=120157 Score = 75.2 bits (82), Expect = 2e-11 Identities = 118/171 (69%), Gaps = 11/171 (6%) Strand=Plus/Minus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||||||||| ||||||| |||||| ||||| ||||| ||||||||||| || Sbjct 65483 GGGCAGGCGTCAGACCCTATACTTCGTCTATTGACTTTGCAGAGCCCTGTGTTTTTAATA 65424 Query 265 AACAGTCGCTTGGGCCTATTCTCTGCGGCCTGT-----------CATAGACAGGCACCCC 313 || ||||||| ||| | | ||| ||| | ||| | ||| || Sbjct 65423 AAAAGTCGCTATCCCCTGGTTTGTGCCACCTATAGATGGTTGCCCATTTATAGGTCATCC 65364 Query 314 TTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||| ||||||| | | |||||| |||||||| | || |||||| Sbjct 65363 TTCTCCCGAAGTTACAGATGTAATTTGCCTAGTTCCTTCAGCATCGTTCTC 65313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061748005120