Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq811 479 9e-133 seq2301 473 4e-131 seq2773 455 1e-125 >seq811 Length=1020237 Score = 479 bits (530), Expect = 9e-133 Identities = 413/502 (82%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 711023 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 711082 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||||||||||||||| | ||||||||||| || | Sbjct 711083 GTGGTTTAATTCGATACAACGCGAAGAACCTTACCTACTCTTGACATCCAGAGAA---TA 711139 Query 121 TAG-AGATAGAGGTTTCC--CCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 || ||| | || ||| ||| |||| || | |||||||| ||||||| |||||| Sbjct 711140 AAGCAGAAA-AGTTTTAGTGCCTACGGGA-ACTCTGAGACAGGTGCTGCATGGCTGTCGT 711197 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 711198 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCATCCTTAGT 711257 Query 238 TGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||||||| | | | || ||||| |||| |||||| |||| || | |||||||| || Sbjct 711258 TGCCATCAGGTAATGCTGAGCACTTTAAGGAAACTGCCAGTGATAAGCTGGAGGAAGATG 711317 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| || ||||| |||||||| || |||||| |||||||||||||||||||||||| Sbjct 711318 GGGATGATGTCAAGTCATCATGGCCTTTATGAAGTGGGCTACACACGTGCTACAATGGTG 711377 Query 356 AATACAAAGGGCAGCGA-AACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 ||||| |||| || | ||| || |||| |||||| |||| ||||||||| Sbjct 711378 TCTACAATGGGCTGCAAGGTGCGCAAGCCTAAGCTAATCCC-TAAAAGACATCTCAGTTC 711436 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 |||||||| |||||||||||| | |||||| ||||||||||||||||||| |||||||| Sbjct 711437 GGATTGTACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCA 711496 Query 475 TGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||| || Sbjct 711497 TGCCACGGTGAATACGTTCTCG 711518 >seq2301 Length=88450 Score = 473 bits (524), Expect = 4e-131 Identities = 409/500 (82%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 4474 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 4415 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 | || |||||||||||||||||||||||||||||||| |||||||| | | | | Sbjct 4414 GCGGATTAATTCGAAGCAACGCGAAGAACCTTACCAAGGCTTGACATATACCGGAAACGC 4355 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 | |||||| || | |||| || | | | ||||||| |||||||||||||||| Sbjct 4354 CCAGAGAT---GGGTGCCCCGCAAGGT--CGGTAT-ACAGGTGGTGCATGGTTGTCGTCA 4301 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 4300 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCTATGTTG 4241 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || | | | |||| |||| || ||||||||| | ||| |||||||||||||| Sbjct 4240 CCAGCACGTGATGGTGGGGACTCATAGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGG 4181 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||||||||||||||||||| | ||||||| ||| | ||||||||||| | Sbjct 4180 GATGACGTCAAATCATCATGCCCCTTACGTCTTGGGCTTCACGCATGCTACAATGGCCGG 4121 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| ||||| |||| ||||| |||| ||| ||||||| ||| | |||||||||||| Sbjct 4120 TACAGAGGGCTGCGATACCGCAAGGTGGAGCGAATCCCAAAAAACCGGTCTCAGTTCGGA 4061 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATG 476 ||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | | Sbjct 4060 TTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACG 4001 Query 477 CTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 4000 CTGCGGTGAATACGTTCCCG 3981 >seq2773 Length=113092 Score = 455 bits (504), Expect = 1e-125 Identities = 406/500 (81%), Gaps = 9/500 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 68958 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 69017 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||| ||||||||| |||||||||||||||||||| ||||||| | | | | | Sbjct 69018 GTGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGTTTGACATACACCGGAAAGCC 69077 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 | |||| | | |||||| | || | | || ||||||| ||||||| |||||||| Sbjct 69078 GTGGAGACACGGCC--CCCCTT--GTGGTCGGTGT-ACAGGTGGTGCATGGCTGTCGTCA 69132 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||| |||| ||||||||||||||||||||||||||||||||||| || |||| Sbjct 69133 GCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTGTGTTG 69192 Query 240 CCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || ||| | |||| |||| || ||||||||| | ||| |||||||||||||| Sbjct 69193 CCAGCACGTAATGGTGGGGACTCGCAGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGG 69252 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| | Sbjct 69253 GACGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACACATGCTACAATGGCCGG 69312 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| ||||| |||| |||| ||||| ||| |||||| ||||| | |||||||||||| Sbjct 69313 TACAGAGGGCTGCGATACCGTGAGGTGGAGCGAATCCCTTAAAGCCGGTCTCAGTTCGGA 69372 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATG 476 | | |||||||||||||| ||||| ||| ||||||||||||| |||||||| | | Sbjct 69373 TCGGGGTCTGCAACTCGACCCCGTGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACG 69432 Query 477 CTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 69433 CTGCGGTGAATACGTTCCCG 69452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503076995200