Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1900 172 9e-41 seq9 170 3e-40 seq679 145 1e-32 seq3069 141 2e-31 seq2016 140 6e-31 seq8044 136 7e-30 seq1598 136 7e-30 seq53 114 2e-23 seq4 105 1e-20 seq2062 104 4e-20 seq15294 86.0 1e-14 seq306 86.0 1e-14 seq22 86.0 1e-14 seq14536 82.4 1e-13 seq173 80.6 5e-13 seq2773 78.8 2e-12 seq296 75.2 2e-11 >seq1900 Length=258360 Score = 172 bits (190), Expect = 9e-41 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| | Sbjct 78844 CGAATTCTGCTTCGTAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCAC 78785 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| Sbjct 78784 TATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTAACACTTCT 78727 >seq9 Length=5878049 Score = 170 bits (188), Expect = 3e-40 Identities = 137/165 (83%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 77 GCTCACGTTCCCTATTAGTGGGTGA---ACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||| | ||||||||||||||| | ||||||| ||| || |||||||||||||| Sbjct 3285630 GCTTATGTTCCCTATTAGTGGTATATAGACAATCCGACGTTTGGCGAATTCTGCTTCGCA 3285571 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| Sbjct 3285570 ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTTACTATGAATTCTTGGCCA 3285511 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||| || || || ||||||||| ||| ||| || Sbjct 3285510 CCACAAGCCAGTTATGCCAGTAGTCACTTTTCTGACACATCTTGC 3285466 >seq679 Length=971210 Score = 145 bits (160), Expect = 1e-32 Identities = 100/112 (89%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 |||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||| Sbjct 782820 TGAACAATCCGACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAG 782761 Query 159 GATCAAAAAGCAAC-GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||| | |||||||||||||||| |||| |||||||||||| Sbjct 782760 GATCAAAAAGCAACATTTGCTATGAACGCTTGGCCGCCATAAGCCAGTTATC 782709 >seq3069 Length=78418 Score = 141 bits (156), Expect = 2e-31 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| ||| ||| | |||||| ||| | | | |||| |||||| ||||| || |||| Sbjct 78059 TCACGACAGTCAAGACCCAGTTCATGATTCTTATTGACAGGTGAAAAATCCGACACTTAG 78000 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| ||||||| ||| || ||| | || ||||||||||| || ||| Sbjct 77999 CGAATTCTGCTTCGCGATGATAGCAAGGGCTGACTTTCAATGATCAAAAAGCGACATCGA 77940 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||||| ||||||| ||||||| ||||||| ||||||||||||| Sbjct 77939 TATGAAAGCTTGGCCATCACAAGCGAGTTATCTCTGTGGTAACTTT 77894 >seq2016 Length=270627 Score = 140 bits (154), Expect = 6e-31 Identities = 157/209 (75%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||| |||||| || |||||||||||| ||||||||||| |||||| | |||| | Sbjct 129874 GTCACCAGAAGGGTAGAATTAACCTGTCTCACGACGGTCTAAAGCCAGCTTATGTTCTTT 129815 Query 90 ATTAGTGGGTGAACA--ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 | | | ||||||| | ||| ||||| | ||||||||||| || || ||||| Sbjct 129814 ACTGGCGGGTGAAAAAGATCTGACGCTAAGATAATTCTGCTTCATAATATTATATAGAGC 129755 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||| |||| |||||||||||||||||| |||| || ||| || ||| | ||| Sbjct 129754 CGACCTCGAGGGATCAAAAAGCAACGTCACTATAAAACCTTAGC-----CAAATTAATTA 129700 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTA 236 | ||||||| || ||||||| || || || Sbjct 129699 TTCCTGTGGCAAATTTTCTGACATCTATA 129671 >seq8044 Length=14851 Score = 136 bits (150), Expect = 7e-30 Identities = 134/172 (78%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 || ||| | |||||||||| | | | |||| |||||| ||||| || |||| ||||| Sbjct 5713 ACAGTCAAGACCCAGCTCATGATTCTTATTGAAAGGTGAAAAATCCGACACTTAGCGAAT 5654 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||||||| ||||||| ||| |||||| | || ||||||||||| || | | ||||| Sbjct 5653 TCTGCTTCGCGATGATAGCAAGGGCCGACTTTCAATGATCAAAAAGCGACATTGATATGA 5594 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | || |||| ||||||| ||||||| |||||||||| | |||| ||||| Sbjct 5593 AAGCGTGGCCATCACAAGCGAGTTATCTCTGTGGTAAC-TCTCTGAAACCTC 5543 >seq1598 Length=157461 Score = 136 bits (150), Expect = 7e-30 Identities = 134/172 (78%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 || ||| | |||||||||| | | |||| |||| | ||||| || |||| ||||| Sbjct 81562 ACAGTCAAGACCCAGCTCATGATTTTTATTGACAGGTGGAAAATCCGACACTTAGCGAAT 81621 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||||||| ||||||| ||| |||||| | || ||||||||||| || | | ||||| Sbjct 81622 TCTGCTTCGCAATGATAGCAAGGGCCGACTTTCAATGATCAAAAAGCGACATTGATATGA 81681 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | || |||| ||||||| ||||||| |||||||||| |||||| |||||| Sbjct 81682 AAGCGTGGCCATCACAAGCGAGTTATCTCTGTGGTAAC-TTTCTGACACCTC 81732 >seq53 Length=4453290 Score = 114 bits (126), Expect = 2e-23 Identities = 88/103 (85%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct 1686107 TACTGAGCAGGATTACTATTGCAACGACTCGTCATCAGTAGGGTAAAACTAACCTGTCTC 1686166 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 | ||||| ||||||| ||||||||||||||||| | |||||| Sbjct 1686167 ACGACGGGCTAAACCTAGCTCACGTTCCCTATTGGCAGGTGAA 1686209 >seq4 Length=7563771 Score = 105 bits (116), Expect = 1e-20 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||| Sbjct 7457557 GTCATCAGTAGAGTAAAACTAACCTGTCTTACGACGGTCTAAATCCAGCTCACGTTCCCT 7457616 Query 90 ATTAGTGGGTGAACAA 105 ||| | ||||||||| Sbjct 7457617 ATTGGCAGGTGAACAA 7457632 >seq2062 Length=149618 Score = 104 bits (114), Expect = 4e-20 Identities = 148/209 (71%), Gaps = 22/209 (11%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCA----TGACGGTCTAAACCCAGCTCACGTT 85 |||| ||| ||||| || ||||||||||| |||| | |||| |||||| | ||| Sbjct 118195 GTCACCAGAAGGGTCGAATTAACCTGTCTCTAAAGTGACAGGTTAAAGCCAGCTTATGTT 118254 Query 86 CCCTATTAGTGGGTGAACAA-TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 | || | | ||||||| || || ||||| | ||||||||||| || Sbjct 118255 CTTTACTGGCGGGTGAAAAAATCTGACGCTAAGATAATTCTGCTTC------------AG 118302 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 |||| || || |||||||||||||||| ||| ||||||| ||| || ||| || Sbjct 118303 AGCCTACCTCAAAGGATCAAAAAGCAATGTCACTATGAAACCTTAGC-----CAAATCAA 118357 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||| |||||||||| ||||||| || || Sbjct 118358 TTATTCCTGTGGTAAATTTTCTGACATCT 118386 >seq15294 Length=22841 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct 6313 TACTGAGCAGAATTACTATTGCAACGACTCGTCATCAGTAGGGTAAAACTAACCTGTCTC 6372 Query 60 ATGACGGTCTAAACCCA 76 | ||| |||||||| || Sbjct 6373 ACGACTGTCTAAACGCA 6389 >seq306 Length=2425606 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| |||| || |||||||| |||||||||||||| || Sbjct 436575 TACTGAGCAGGATTACTATTGCAACGACTCGTTATCAGTAGAGTAAAACTAACCTGACTG 436634 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 || | ||||||||| |||||| ||||||| || ||| ||||| Sbjct 436635 ATAATAGTCTAAACCTAGCTCATGTTCCCTTTTGGTGATTGAAC 436678 >seq22 Length=4097042 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct 1552833 TACTGAGCAGAATTACTATTGCAACGACTCGTCATCAGTAGGGTAAAACTAACCTGTCTC 1552774 Query 60 ATGACGGTCTAAACCCA 76 | ||| |||||||| || Sbjct 1552773 ACGACTGTCTAAACGCA 1552757 >seq14536 Length=10445 Score = 82.4 bits (90), Expect = 1e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 9799 GGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACAT 9856 >seq173 Length=2773649 Score = 80.6 bits (88), Expect = 5e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGC 78 ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 2153475 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGTCGGTCTAAACTCAGC 2153427 >seq2773 Length=113092 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 72796 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACC 72737 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| Sbjct 72736 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 72680 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | |||| |||||||| | |||| ||||| Sbjct 72679 CCCGTCGATATGGACTCTTGGGGAAGATCAGCCTGTTATCCCCGGGGTACCTTTT 72625 >seq296 Length=1223864 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGC 78 ||||||||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 850738 GTCATCAGTAGTGTAACACTAACCTGTCTCACGACGGTCTAAACCCAGC 850690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853875654720