Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq811 307 2e-81 seq2301 214 4e-53 seq2773 199 8e-49 >seq811 Length=1020237 Score = 307 bits (340), Expect = 2e-81 Identities = 271/335 (81%), Gaps = 16/335 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||||| ||| || ||| ||| ||||||||||||||||||||| Sbjct 710593 CTTTACAACCCAAAGGCCTTCTT-CACTCATGCGACAT-GGCTGGATCAGGCTTTCGCCC 710536 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 710535 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGACCGTATCTCAGTTCCAG 710476 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||| ||| || |||| | |||||||| || ||||| || Sbjct 710475 TGTGGCTGGTCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCA 710416 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | ||||||||||| ||| |||| || | || Sbjct 710415 CCAACTAGCTAATCTAATATAGGCTCATCTAATA--GCAA-----TAAATT-------TT 710370 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| ||||| ||||||||| |||||||| | |||| || ||||| || Sbjct 710369 TCCCCCGTAGGGCGTATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAG 710310 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||||| ||||||||||||||| ||| || Sbjct 710309 GTAGATTCCTATACATTACTCACCCGTCTGCCACT 710275 >seq2301 Length=88450 Score = 214 bits (236), Expect = 4e-53 Identities = 164/192 (85%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| |||||||||||||||| Sbjct 4917 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 4974 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 4975 TTGTGCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 5034 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| ||||||||||||||||||| |||||||| Sbjct 5035 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCACTACCTCAC 5094 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 5095 CAACAAGCTGAT 5106 >seq2773 Length=113092 Score = 199 bits (220), Expect = 8e-49 Identities = 161/192 (84%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| ||||||||| |||||| Sbjct 68517 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTGCGCCCA 68460 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 68459 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 68400 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | || |||||||| || | ||| ||||||||||||| ||||||||| ||| Sbjct 68399 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCAC 68340 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 68339 CAACAAGCTGAT 68328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071342113600