Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2773 773 0.0 seq2301 738 0.0 seq811 343 5e-92 >seq2773 Length=113092 Score = 773 bits (856), Expect = 0.0 Identities = 538/604 (89%), Gaps = 8/604 (1%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| | |||| || ||||||||||||| ||||||||||||| ||| |||||||| Sbjct 71029 TCGACTACGAACCTTA-TCGCCCGCAGTCTCACTGCCGCGCTCTCACATCCTGGCATTCG 70971 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 70970 GAGTTTGGCTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTAGCTCTACCTCC 70911 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 70910 AGGATGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGGAG 70851 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 70850 TTTGATTGGCCTTTCACCCCTACCCACAACTCATCCCCTCAGTTTTCAACCTAAGTGGGT 70791 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||||| |||||||| ||||||| |||| |||||| ||||||||| ||||| Sbjct 70790 TCGGGCCTCCACGACGTCTTACCGTCGCTTCACCCTGGCCATGGGTAGATCACTCCGCTT 70731 Query 300 CGGGTCTTGATCGTGCCACT-CATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 |||||| || | ||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 70730 CGGGTCCAGAGCATGCGACTAAATTCGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 70671 Query 359 CACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 |||||||||||||||||| ||| | | | |||||||||||||||||||||||||||||| Sbjct 70670 CACACGGGTTAACCTCGCCACATACCACTGACTCGCAGGCTCATTCTTCAAAAGGCACGC 70611 Query 419 CGTCACC--TGGTACCTAAAAG-GCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTC 475 | ||||| ||| ||| | |||| |||| ||||||||||| || || |||||| Sbjct 70610 CATCACCCACCACACCGAAATGTGCAC--AGGCTCTGACGGATTGTAAGCGCACGGTTTC 70553 Query 476 AGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| Sbjct 70552 AGGTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCG 70493 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAAT 595 ||||||||||||| |||||||| ||||||| |||||||||||| |||||||||| | || Sbjct 70492 CTATCGGTCACCAGGGAGTATTCAGGCTTATCGGGTGGTCCCGACAGATTCACAGCAGAT 70433 Query 596 TTCA 599 |||| Sbjct 70432 TTCA 70429 >seq2301 Length=88450 Score = 738 bits (818), Expect = 0.0 Identities = 526/600 (88%), Gaps = 13/600 (2%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| |||||| |||||||||||||||| ||| ||||||||||| |||||||||| Sbjct 2377 TCGACTACGAAGCTTA-TCCCCCGCAGTCTCACTGCCACGCTCTCACTTACCGGCATTCG 2435 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| | | || |||| || ||| | ||||| | ||||||| ||||||||||| Sbjct 2436 GAGTTTGGCTAACGTCAGTAACCTGGTGAGGCCCCTCAGCTATCCAGTAGCTCTACCTCC 2495 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2496 GGTAAGAAACACGTGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGGAG 2555 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2556 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTTAACCTAAGTGGGT 2615 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 2616 TCGGTCCTCCACACGGTCTTACCCGCGCTTCAACCTGGCCATGGATAGATCACTCCGCTT 2675 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| || | || |||||||||||||||||||||||||||||||||||||| |||| Sbjct 2676 CGGGTCTAGACCCAGCGACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTTCCCC 2735 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| || | | | |||||||||||||||||||||||||||||||| Sbjct 2736 ACACGGGTTAACCTCGCCACTGAGCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 2795 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| || | |||| |||||||||||||||| ||||| ||||||||| Sbjct 2796 GTCACC-----CCAACAAGG-----AGGCTCCGACGGATTGTAAGCACACGGTTTCAGGA 2845 Query 480 ACTATTTCACTC-CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 ||||||||||| | || || |||||||||||||||||||||||||||||||||| Sbjct 2846 TCTATTTCACTCTTCTATTAGAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 2905 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 |||||||||| ||| |||||||||||| | |||||||| ||||||||| |||| ||||| Sbjct 2906 TCGGTCACCAGGGAATATTTAGGCTTAGCAGGTGGTCCTGCCAGATTCGCACGGGATTTC 2965 >seq811 Length=1020237 Score = 343 bits (380), Expect = 5e-92 Identities = 414/553 (75%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGC 110 || ||||||||||||||| ||||| |||||| | || |||||||| | ||||||||| Sbjct 847125 GGTATTCGGAGTTTGGTTAGATTT-GGTAAGATGATGAATCCCCCTAGTCTATCCAGTGC 847067 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| || || | | | | ||||| |||||||| |||||| |||||||||||| Sbjct 847066 TCTACCCCCAACAACATAAATACAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCT 847007 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 || | ||||||||||||||||||||||| |||| |||||| | | || |||| Sbjct 847006 ATTTCCCGGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATAATGTTGCAACA 846947 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | | |||||| |||| || || ||||| |||||| ||| |||| |||||| Sbjct 846946 TTAACTGGTTCGATCCTTCAGTATGTTTTACCATACCTTCAATCTGGTCATGACTAGATC 846887 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 |||| | ||||||||| | | ||| | ||||||||||| |||| ||||||||||| Sbjct 846886 ACTTGGTTTCGGGTCTAATCCATAAAACTAA-ACGCCCTATTCAGACTTGCTTTCGCTAC 846828 Query 351 GGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 | |||| || ||| |||| || || || | || ||||| | | |||| | |||| Sbjct 846827 GCCTACACCTACCGGCTTAAGCTTGCTTCATAGATTAA-CTCGCTGACCCATTATGCAAA 846769 Query 411 AGGCACGCCGTCAC-CTGG-TACC--TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||| |||| ||||| || || | |||| | | |||||| || | ||||| ||| Sbjct 846768 AGGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCA 846709 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | || |||||| | |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 846708 CTTGATTTCAGATTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGT 846649 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||||| | ||||||||| ||||||||||||||||| || ||||||| ||| |||| Sbjct 846648 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 846589 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 846588 AAACAGGATTTCA 846576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816484538880