Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq811 269 7e-70 seq2301 257 4e-66 seq2773 174 4e-41 >seq811 Length=1020237 Score = 269 bits (298), Expect = 7e-70 Identities = 300/390 (77%), Gaps = 23/390 (6%) Strand=Plus/Minus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||| |||| |||| || ||||| ||||| ||| ||| ||| | |||||| | Sbjct 846940 GGTTCGATCCTTCAGTATGTT-TTACCATACCTT-CAATCTGGTCAT-GACTAGATCACT 846884 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 ||||| |||||||| | | | |||| |||||||| | ||||| ||||| ||||||| Sbjct 846883 TGGTTT-CGGGTCTAATCCATAAA-ACTAAACGCCCTATTCAGACTTGCTTT-CGCTACG 846827 Query 165 CCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAA 223 ||| | |||| | |||||||| || | | | ||| ||||||||||||||| ||||| Sbjct 846826 CCTACACCTACCGGCTTAAGCTT-GCTTCATAGATTAACTCGCTGACCCATTATGCAAAA 846768 Query 224 GGTACGCAGTCACCC--------AACAAAGTGG------GCTCCCACTGCTTGTACGCAT 269 ||||||| ||||| | || ||| || ||||| |||| ||||| ||| Sbjct 846767 GGTACGCTGTCACTCTAAATATCAATAAATTGATATAGAGCTCCAACTGTTTGTAAGCAC 846708 Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 846707 TTGATTTCAGATTCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGT 846649 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389 ||| |||||||||||||| | || ||||||||| ||||||||||||||||||||||||| Sbjct 846648 ACTTGTTCACTATCGGTCGTTAAGGAGTATTTAGGCTTGGAGGATGGTCCCCCCATATTC 846589 Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||| |||| ||||| ||| |||||| Sbjct 846588 AAACAGGATTTCACGTGCCCCGCTCTACTC 846559 >seq2301 Length=88450 Score = 257 bits (284), Expect = 4e-66 Identities = 315/417 (76%), Gaps = 10/417 (2%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | ||||| ||| ||| |||||||||||||| | Sbjct 2574 CCTATCCACAGCTCATCCC-CTCAGTTTTT-AACCTAAGTGGGTTCGGTCCTCCACACGG 2631 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||| ||||||| |||| ||||||||| | | | || |||||||| | Sbjct 2632 TC-TTACCCGCGCTT-CAACCTGGCCAT-GGATAGATCACTCCGCTT-CGGGTCTAGA-C 2686 Query 124 CCAGCGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 ||||||||| | |||||||| | |||||||||| ||||||| || ||| | ||| | | Sbjct 2687 CCAGCGACTCATACGCCCTATTCGGACTCGCTTT-CGCTACGGCTTCCCCACACGGGTTA 2745 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | |||||||| | ||| |||| | | |||| | ||||||| |||| ||||||| | Sbjct 2746 ACCTCGCCACTGAGCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCCCAA 2805 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| |||||| || | ||||| ||| |||||||||||||||||||||||| || | Sbjct 2806 CAAGGAGGCTCCGACGGATTGTAAGCACACGGTTTCAGGATCTATTTCACTCTTCTATTA 2865 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 | ||||||||| |||||||||||||||||| || | |||||||||| | | ||||| Sbjct 2866 GAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAGGGAATATTT 2925 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 || ||| | | |||||| ||| |||| || ||||||| || |||| ||||| Sbjct 2926 AGGCTTAGCAGGTGGTCCTGCCAGATTCGCACGGGATTTCTCGAGCCCCGTACTACT 2982 >seq2773 Length=113092 Score = 174 bits (192), Expect = 4e-41 Identities = 287/403 (71%), Gaps = 21/403 (5%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 |||||||| ||| ||||||| |||||| || ||||| ||| || |||| || Sbjct 70808 TTTTCAACCTAAGTGGGTTCGGGCCTCCACGACGTC-TTACCGTCGCTT-CACCCTGGCC 70751 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA--CGCCCTAGTAAG 147 || || |||||| | | | || |||||| | | ||||||| | ||||||| | | Sbjct 70750 ATGGG-TAGATCACTCCGCTT-CGGGTCCAGAGCAT-GCGACTAAATTCGCCCTATTCGG 70694 Query 148 ACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAA-TAAGTCGC 206 ||||||||| ||||||| || ||| | ||| | | | | ||||| | | | | |||| Sbjct 70693 ACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTCGCCACATACCACTGACTCGC 70635 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA-------GTG----GGCTCCCA 255 | | |||| | ||||||| |||| ||||||| || | ||| ||||| | Sbjct 70634 AGGCTCATTCTTCAAAAGGCACGCCATCACCCACCACACCGAAATGTGCACAGGCTCTGA 70575 Query 256 CTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGC 315 | | ||||| || ||||||||||| |||||||||||||||| ||||||| |||||| | Sbjct 70574 CGGATTGTAAGCGCACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCAC 70516 Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375 |||||||||||||||||||| | |||||||||| | |||||| || ||| || || Sbjct 70515 CTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTCAGGCTTATCGGGTG 70456 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||| || ||||| | | |||| || || | | ||||| Sbjct 70455 GTCCCGACAGATTCACAGCAGATTTCACGGGCCCGCTGCTACT 70413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240838030080