Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1277 91.5 9e-17 seq1104 91.5 9e-17 seq261 87.8 1e-15 seq51185 84.2 1e-14 seq9629 82.4 5e-14 seq4582 82.4 5e-14 seq2065 82.4 5e-14 seq1595 78.8 6e-13 seq2494 77.0 2e-12 seq14 75.2 7e-12 seq2280 71.6 8e-11 seq599 71.6 8e-11 >seq1277 Length=340588 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 138897 CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 138954 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 138955 TAAT-CAACGCGAGCT 138969 >seq1104 Length=660783 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 335844 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 335788 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 335787 GGCAGGGACGTAAT-CAACGCGAGCT 335763 >seq261 Length=1587481 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| | ||||| ||||||||| ||||||||||| |||||||||| Sbjct 36802 TCCGAA-GACCTCACTAAATC-TTTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 36858 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||| |||| Sbjct 36859 GGCAGGGACGTAAT-GAACGCGAGCT 36883 >seq51185 Length=1112 Score = 84.2 bits (92), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 ||||||| |||| || || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 532 TCACTAAATCATT-CAATCAGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGT 475 Query 110 AATACAACGCAAGCT 124 ||| |||||| |||| Sbjct 474 AAT-CAACGCGAGCT 461 >seq9629 Length=24877 Score = 82.4 bits (90), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 22 CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAA-GGCAGGGACG 78 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 79 TAAT-CAACGCGAGCT 93 >seq4582 Length=50837 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| ||| || ||||||||| ||||||||||| ||||| |||| Sbjct 40501 TCCGAA-GACCTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTATAAAG 40445 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 40444 GGCAGGGACGTAAT-CAACGCGAGCT 40420 >seq2065 Length=101534 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||| Sbjct 62429 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTATGTACAAAT 62485 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 62486 GGCAGGGACGTAAT-CAACGCGAGCT 62510 >seq1595 Length=254597 Score = 78.8 bits (86), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||| ||| |||||||| || |||||||||| Sbjct 139823 TCCGAA-GACCTCACTAAATCATT-CAATCGGTTGTA-GCGACGGGTGGTGTGTACAAAG 139767 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||| || |||||| |||| Sbjct 139766 GGCAGGGACGTGAT-CAACGCGAGCT 139742 >seq2494 Length=93536 Score = 77.0 bits (84), Expect = 2e-12 Identities = 73/87 (84%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAA- 97 |||||| | |||||||| |||| || |||||||||| | |||| ||| ||||||||| Sbjct 29834 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTAA-CAACGGACGGTGTGTACAAAG 29778 Query 98 GGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||| |||||| |||| Sbjct 29777 GGGCAGGGACGTAAT-CAACGCGAGCT 29752 >seq14 Length=4725324 Score = 75.2 bits (82), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 4/79 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 ||||||| | ||||||| | || || || |||||| ||||||||||| |||||||||| Sbjct 2178157 TCCGAAAACT-TCACTAAATCGTT-CAATCAGTAGTA-GCGACGGGCGGTGTGTACAAAG 2178213 Query 99 GGCAGGGACGTAATACAAC 117 |||||||||||||| |||| Sbjct 2178214 GGCAGGGACGTAAT-CAAC 2178231 >seq2280 Length=121987 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||||| || |||| ||| ||||| |||||||||||||||||| |||||| | Sbjct 113554 TTCAATCGGTAGTA-GCAACGGTCGGTGTGTAAAAAGGGCAGGGACGTAAT-CAACGCGA 113611 Query 122 GCT 124 ||| Sbjct 113612 GCT 113614 >seq599 Length=918198 Score = 71.6 bits (78), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 3/80 (4%) Strand=Plus/Minus Query 43 AAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCA 102 |||| |||||||| |||| || ||||||||| ||||||||||| ||||||||| ||| Sbjct 890153 AAAGACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAATGGCG 890096 Query 103 GGGACGTAATACAACGCAAG 122 ||| |||||| ||| || || Sbjct 890095 GGGTCGTAAT-CAATGCGAG 890077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300626936600