Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2773 367 3e-99 seq2301 363 4e-98 seq811 168 2e-39 seq2167 132 1e-28 >seq2773 Length=113092 Score = 367 bits (406), Expect = 3e-99 Identities = 341/440 (78%), Gaps = 41/440 (9%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| |||||||||||| |||| || ||| || || Sbjct 71465 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTCACCCTGGGCGGATTAACCTGGCC 71406 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| | |||||||||| | ||| ||| |||| ||||||||||||||| Sbjct 71405 CAGGAACCCTTGGTCATTCGGCGGACGAGTTTCTCACTCGTCTTTCGCTACTCATGCCTG 71346 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCAC-CCGGCAGCTTCACCACTGACACGA 179 ||||||||||||| | |||||| | |||| ||||| ||||| || |||||| Sbjct 71345 CATTCTCACTCGCGTGGCCTCCACACCTGGATCACTCCGGC-GCTTCCCCGGCCACACGA 71287 Query 180 CGCTCCCCTACCCAACCACACAGGTTGCC--------------------------ACA-- 211 |||||||||||||| ||||||| | ||| ||| Sbjct 71286 CGCTCCCCTACCCACCCACACACCTGGCCCACCATCCGCAGACGATGGACGGGATACATG 71227 Query 212 -----------GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACT 260 |||||||||| |||| |||||||||||||| ||||||| ||||||| Sbjct 71226 TGAGTGCCGCGGCTTCGGCGGTGTACTTGAGCCCCGCTACATTGTCGGCGCAAAATCACT 71167 Query 261 TGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGT 320 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 71166 TGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGT 71107 Query 321 TGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGA 380 ||||| ||| ||| |||||||||| ||||| ||| | ||||||||||||||| | || Sbjct 71106 TGTCTTCGCGACTTCACATCCTTTTCCACTTAGTACACGCTTAGGGGCCTTAGCCGGCGA 71047 Query 381 TCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||| Sbjct 71046 TCTGGGCTGTTTCCCTCTCG 71027 >seq2301 Length=88450 Score = 363 bits (402), Expect = 4e-98 Identities = 338/434 (78%), Gaps = 35/434 (8%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| Sbjct 1947 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 2006 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| | ||| ||| | | ||| ||| | ||| ||||||||||||||| Sbjct 2007 CTGGAACCCTTGGTCATCCGGTGGAAGAGTTTCTCACTCTTCATTCGCTACTCATGCCTG 2066 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | ||||| | |||| | || ||||||| ||||||| Sbjct 2067 CATTCTCACTCGTGTAGCATCCACGGCTGGATCACTCCGCCGCTTCACTCGCCACACGAC 2126 Query 181 GCTCCCCTACCCAACCACAC--------------AGGT-------------------TGC 207 ||||||||||||| | |||| |||| ||| Sbjct 2127 GCTCCCCTACCCATCAACACGCCTGGACCCACCAAGGTGGGCCGAGCCATGTGTCAATGC 2186 Query 208 CACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAG 267 |||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||| Sbjct 2187 CACAACTTCGGTGATGTGCTTGAGCCCCGCTACATTGTCGGCGCGGAATCACTTGACCAG 2246 Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| Sbjct 2247 TGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCACA 2306 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||||||||||||||||| ||||| || ||| | ||||||| |||||| || ||||||||| Sbjct 2307 GCAACTCCACATCCTTTACCACTTAG-CACACGCTTAGGGACCTTAGTTGGTGATCTGGG 2365 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 2366 CTGTTTCCCTCTCG 2379 >seq811 Length=1020237 Score = 168 bits (186), Expect = 2e-39 Identities = 292/420 (70%), Gaps = 22/420 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGT-CGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGAC 59 ||||||| ||| | ||| |||||||||||| |||||| |||| ||||| ||||| || Sbjct 847592 CGACTACTCCTTTACGGACTCGCCTTAGGAACCGACTAACCCTACGCAGATTAACTTAAC 847533 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 ||||||||| ||| | || | | | || ||| | | |||||||| ||| | Sbjct 847532 GTAGGAACCCTTAGATTTTTGGTGAGAGTGTTTTTCACACTCTTTTACGCTACTTATGTC 847473 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||||||||| | | ||||| || |||| || |||||| ||| || Sbjct 847472 AGCATTCTCACTTCCGATATCTCCAGCAGTTT-TCACAAACCACCTTCACAGACTTACGG 847414 Query 178 GACGCTCCCCTACCCAACC-AC------------ACAGGTTGCCACAGCTTCGGCGGATA 224 ||||||| ||||| || || | | | ||||| |||||| | | Sbjct 847413 AACGCTCCGCTACCGCGCCTACTAATCGAAATCAATAAGCACCCACATCTTCGGTATACA 847354 Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACG 279 ||| ||||||| |||||| ||||||| ||| |||| ||| |||||||| ||||| Sbjct 847353 GCTTTAGCCCCGGTACATTTTCGGCGCAGAAAAACTTATTTAGACAAGTGAGCTGTTACG 847294 Query 280 CACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACAT 339 | ||||| ||||||||||||||||||||||||||||| | ||| | || || | Sbjct 847293 CTTTCTTTAAAGGATGGCTGCTTCCAAGCCAACCTCCTAGCTGTAATGGTTTTTCTACTT 847234 Query 340 CCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 ||||||||||| || | || ||| |||||| | ||||||||||||||||||| || Sbjct 847233 CCTTTCCCACTTAGCTGTAATTTTGGGACCTTAGATAGTGATCTGGGCTGTTTCCCTTTC 847174 >seq2167 Length=120157 Score = 132 bits (146), Expect = 1e-28 Identities = 237/339 (70%), Gaps = 18/339 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||| ||||||| || ||||| ||||||| |||||| | || | ||||| ||||| || Sbjct 65140 CGATTACGCCTTTCAGCCTCACCTTAGGGGCCGACTAAGCCTGCGCAGATTAACTTTACG 65081 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118 | | |||||||||| |||||| | ||| ||| | | | ||||||| ||| | Sbjct 65080 CAGAAACCCTTGGACTTTCGGCGAGAATGTTTCTCACATTCTTTAT-CGCTACTTATGTC 65022 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 ||||||||||| | | ||||| || || |||| || |||||| || || Sbjct 65021 AGCATTCTCACTTCCGATACCTCCAGCAAACT-TCACAGTTCACCTTCACAGGCTTACGG 64963 Query 178 GACGCTCCCCTACC--CA--ACCACACAGGTTG----CCACAGCTTCGGCGGATAACTTA 229 ||||||| ||||| || || | | || || || |||||| || |||| Sbjct 64962 AACGCTCCGCTACCATCAGCACTATTAAAGTGCAAATCCGCATCTTCGGTACATGACTTG 64903 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTC 284 ||||||| ||||| | ||||| | | |||| ||| ||||||||||||||| || Sbjct 64902 AGCCCCGTTACATATTTGGCGCAGGAAAACTTATTTAGACTAGTGAGCTATTACGCTTTC 64843 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 ||| || |||||||||||| |||||||| |||| ||||| Sbjct 64842 TTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGT 64804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176877306880