Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2773 230 4e-58 seq2301 230 4e-58 seq811 176 7e-42 >seq2773 Length=113092 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||||| | |||| | ||||||||||||| ||||| Sbjct 68840 CCCACGCTTTCGCTCCTCAGCGTCAGTTATTTCCCAGAGACCCGCCTTCGCCACCGGTGT 68781 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| |||||||| | || || | || Sbjct 68780 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGTCTCCCCTGAAATAC 68721 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | || || |||| || | ||||||| | ||||||||| ||| Sbjct 68720 TCAAGTCTGCCCGTATCGCCTGCAAGCCAACAGTTGAGCTGCTGGTTTTCACAGACGACG 68661 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||||| ||||||||| |||||| Sbjct 68660 CGACAAACCGCCTACGAGCTCTTTACGCCCAGTAATTCCGGACAACGCTTGCACCCTACG 68601 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||| |||| |||| ||| |||||| Sbjct 68600 TATTACCGCGGCTGCTGGCACGTAGTTGGCCGGTGCTTCTTCTGCAGGTA 68551 >seq2301 Length=88450 Score = 230 bits (254), Expect = 4e-58 Identities = 220/282 (78%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||||||||| | | |||| | | |||||||||| ||||| Sbjct 4592 CCCACGCTTTCGCTTCTCAGCGTCAGTAATGGCCCAGAGACCTGCCTTCGCCATCGGTGT 4651 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||| ||||||||||| |||||||| | || || | ||| Sbjct 4652 TCCTCCTGATATCTGCGCATTCCACCGCTACACCAGGAATTCCAGTCTCCCCTACCACAC 4711 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | || | | |||| ||| | ||| ||||| |||||||||| | ||| Sbjct 4712 TCTAGTCTGCCCGTACCCACTGCAAGCTCGGAGTTAAGCCCCGAGTTTTCACAGCAGACG 4771 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | ||||||||| || |||||| |||||||| |||||| |||||| || |||||| Sbjct 4772 TGACAAACCGCCTACAAGCTCTTTACGCCCAATAATTCCGGACAACGCTCGCACCCTACG 4831 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||||||||||| |||| ||| Sbjct 4832 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTCTTC 4873 >seq811 Length=1020237 Score = 176 bits (194), Expect = 7e-42 Identities = 208/282 (74%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| | | || |||||| ||| || | ||||||||||||||||||| Sbjct 710910 CCCACGCTTTCGTACTTGAGTGTCAGTATTCGTCTAGTGAGCCGCCTTCGCCACTGGTGT 710851 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||| |||| |||| ||| ||||| |||||||| | ||||| | Sbjct 710850 TCCTCCTAATATTTACGAATTTTACCTCTACATCAGGAATTCCTCTATCCTCTTTCAATC 710791 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || ||| || ||||| ||| ||| |||| |||| | |||||| | | ||| Sbjct 710790 TCTAGATTAATAGTTTTAAAAGCAATTCCAAGGTTAAGCCTCGGGATTTCACTTTTAACT 710731 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||| |||||||||| |||||||| |||| |||||||| ||| || || Sbjct 710730 TATTAATCAGCCTACGCGCCCTTTACGCCCAATAATTCCGAATAACGCTAGCCCTCTCCG 710671 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| |||||||| | ||| ||| Sbjct 710670 TATTACCGCGGCTGCTGGCACGGAGTTAGCCAGGACTTCTTC 710629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828307260270