Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq811 116 3e-24 seq2167 105 5e-21 seq2301 75.2 8e-12 >seq811 Length=1020237 Score = 116 bits (128), Expect = 3e-24 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||| ||||||||| || | ||||||||||||||||| Sbjct 848528 TACCTTTTATCCGTTGAGCGATAACCCTTCCATACAGAATTACCGGATCACTATGACCGA 848469 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| |||| |||||| ||| ||| ||| |||||||| ||||| Sbjct 848468 CTTTCGTCTCTGCTTGGCTTGTCAGCCTCGCAGTCAGGCAAGCTTATGCCATTGTACTAT 848409 Query 121 CACTACGATTTCCGACC 137 || ||||||||||| Sbjct 848408 CAAGCTGATTTCCGACC 848392 >seq2167 Length=120157 Score = 105 bits (116), Expect = 5e-21 Identities = 107/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||| |||| ||||||| |||||||| || ||||||||||||||||||| Sbjct 66178 TACCTTTTATTCGTTAAGCGATGACCCTTCCACTCGGGACCACCGGATCACTATGACCGA 66119 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| |||| |||||| ||| || ||| |||||||||||| | Sbjct 66118 CTTTCGTCTCTGCTCGTCTTGTCAGACTCGCAGTCAGGCTAGCTTATGCCATTGCACTCT 66059 Query 121 CAC-TACGATTTCCGACC 137 || ||||||||||| Sbjct 66058 AACAGTTGATTTCCGACC 66041 >seq2301 Length=88450 Score = 75.2 bits (82), Expect = 8e-12 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC---CGGATCACTATGAC 57 ||||||||||||||||||||| ||| |||||| || |||||| ||| |||||| | Sbjct 783 TACCTTTTATCCGTTGAGCGACGGCGCTTCCA--CA-AGCCACCGTCGGGTCACTAGTCC 839 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| ||||||| | ||| |||| || |||||| | ||| ||| || ||| Sbjct 840 CGACTTTCGTCTCTGCTCGACATGTCTGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 899 Query 118 T 118 | Sbjct 900 T 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351797479000