Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4329 118 1e-24 seq751 113 5e-23 seq14536 107 2e-21 seq73 96.9 4e-18 seq4582 86.0 6e-15 seq108 77.0 3e-12 >seq4329 Length=81254 Score = 118 bits (130), Expect = 1e-24 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTA 65 || ||||||||||| ||||||||| | | ||||||||| | ||| |||||| | Sbjct 40926 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGATTTCTGCCTGAATACTGTG 40867 Query 66 C-CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 ||||||||||| ||||||||| | |||||||||||||| ||||| || | | || Sbjct 40866 TGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTTTAAGAATCCGAAGT 40808 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||| || |||||| | ||||| || | ||||||||||||||| Sbjct 40807 AATGATTAATAGGGACAGGCGGGGGCATTCGTATTTCGACGTTAGAGGTGAAATTCTTGG 40748 Query 185 AT 186 || Sbjct 40747 AT 40746 >seq751 Length=886750 Score = 113 bits (124), Expect = 5e-23 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTA 65 || ||||||||||| ||||||||| | | ||||||||| | ||| |||||| | Sbjct 551190 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGATTTCTGCCTGAATACTGTG 551131 Query 66 C-CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 ||||||||||| ||||||||| | |||||||||||||| ||||| || | | || Sbjct 551130 TGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTTTAAGAATCCGAAGT 551072 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||| || |||||| | ||||| || | |||||| |||||||| Sbjct 551071 AATGATTAATAGGGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAGATTCTTGG 551012 Query 185 AT 186 || Sbjct 551011 AT 551010 >seq14536 Length=10445 Score = 107 bits (118), Expect = 2e-21 Identities = 138/184 (75%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTA 65 || ||||||||||| ||||||||| | | ||||||||| | ||| |||||| | Sbjct 6277 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGATTTCTGCCTGAATACTGTG 6218 Query 66 C-CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA--CCGCCC 122 ||||||||||| ||||||||| | | ||||||||||| ||||| || || ||| Sbjct 6217 TGCATGGAATAATGGAATAGGACTTTAG-TTCTATTTTGTTGGTTT-TAAGATTCCGAA- 6161 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| ||| |||||| |||||| | ||||| || | ||||||||||||| Sbjct 6160 GTAATGATTAATGGGGATAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 6101 Query 183 GGAT 186 |||| Sbjct 6100 GGAT 6097 >seq73 Length=3477260 Score = 96.9 bits (106), Expect = 4e-18 Identities = 110/145 (76%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTA 65 || ||||||||||| |||||||| | | ||||||||| | ||| |||||| | Sbjct 478658 ACGTTTACTTTGAACCAATTAGAGTGCTTAAAGCAGGCTGATTTCTGCCTGAATACTGTG 478599 Query 66 C-CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 ||||||||||| ||||||||| | |||||||||||||| ||||| || | | || Sbjct 478598 TGCATGGAATAATGGAATAGGACTT-CGGTTCTATTTTGTTGGTTTTAAGAATCCGAAGT 478540 Query 125 AATGATAAATACGGATAGTCGGGGG 149 |||||| |||| ||| || |||||| Sbjct 478539 AATGATTAATAGGGACAGGCGGGGG 478515 >seq4582 Length=50837 Score = 86.0 bits (94), Expect = 6e-15 Identities = 133/184 (72%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTA 65 || ||||||||||| ||||||||| | | || |||||| | ||| |||||| | Sbjct 44829 ACGTTTACTTTGAACAAATTAGAGTGCTTAAGGCAGGCTGATTTCTGCCTGAATACTGTG 44888 Query 66 C-CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 ||||||||||| | ||||| | | |||||||||||||| ||||| || || ||| Sbjct 44889 TGCATGGAATAATGGGATAGGGCTT-CGGTTCTATTTTGTTGGTTT-TAAGA--ATCCGA 44944 Query 125 AATGATA---AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 ||| ||| |||| ||| || |||| | | ||||| || | |||||||||||| Sbjct 44945 AATAATAAGTAATAGGGACAGGCGGGAGCATTCGTATTACGACGTTAGAGGTGAAATTCT 45004 Query 182 TGGA 185 |||| Sbjct 45005 TGGA 45008 >seq108 Length=2308914 Score = 77.0 bits (84), Expect = 3e-12 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 25 AAATTAGAGCGTTCAAAGCAGGCC----TTTGCTCGAATACATTAC-CATGGAATAATAG 79 ||||||||| | | |||||||| | |||| |||||| | |||| |||||| | Sbjct 2226342 AAATTAGAGTGCTTTAAGCAGGCTGATTTCTGCTTGAATACTGTGTGCATGAAATAATGG 2226401 Query 80 AATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGA 139 |||||||| | |||||||||||||| ||||| || | | |||||||| |||| | | Sbjct 2226402 AATAGGACTT-CGGTTCTATTTTGTTGGTTTTAAGAATCCGAAGTAATGATTAATAAGTA 2226460 Query 140 TAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || | || | | ||||| || | || |||||||||||||| Sbjct 2226461 CAGGCAGGAGCATTCGTATTGCGACGTTAGAGATGAAATTCTTGGAT 2226507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511695604800