Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2773 311 1e-82 seq2167 300 2e-79 seq811 291 1e-76 seq2301 178 2e-42 >seq2773 Length=113092 Score = 311 bits (344), Expect = 1e-82 Identities = 231/269 (86%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| |||| ||||| ||| Sbjct 72962 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCCAACCAGCAGTGC 72903 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | ||| | |||||||| ||||||||||| |||| ||||||||||||||||||| ||| Sbjct 72902 TCCTGGTGGAACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGA 72843 Query 128 CAGCTCCTCTCAAATTTCCT-ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGT 186 |||| ||||| |||| | |||| | || ||||||| |||||||||||||| |||||| Sbjct 72842 CAGCCTTCCTCAAGTTTCTTCACGCGCGCGGCGGATAGAGACCGAACTGTCTCACGACGT 72783 Query 187 TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTT 246 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 72782 TCTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTC 72723 Query 247 CAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||| ||||||||||||||| Sbjct 72722 CAGCCCCAGGATGCGACGAGCCGACATCG 72694 >seq2167 Length=120157 Score = 300 bits (332), Expect = 2e-79 Identities = 231/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||||||| |||||||| ||||| Sbjct 66510 GAGGTGGGTTTCCCGCTTAGATGCATTCAGCGGTTATCCCTTCCGTACTTAGCTACCCAG 66451 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 |||||| ||||| ||||||||| |||||||||| ||||| | |||||||||||||| Sbjct 66450 CTATGCCGTTGGCGCGACAACTGGTCCACCAGAGGTACGTCCACCTCGGTCCTCTCGTAC 66391 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||| | || |||||||||| ||||||| |||||| | |||||||||| ||||||||| | Sbjct 66390 TAAAGGCAAATCCTCTCAAACTTCCTACACCCACGGCAGATAGGGACCAAACTGTCTCAC 66331 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 66330 GACGTTCTAAACCCAGCTCTCGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 66271 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || ||| ||||| || Sbjct 66270 TTCTCCGGCCCCAGGATGTGATGAGTCGACAACG 66237 >seq811 Length=1020237 Score = 291 bits (322), Expect = 1e-76 Identities = 229/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 || ||||| ||| ||||| ||||||||||| ||||||| || | || ||||| ||||| Sbjct 848863 GAAGAGGGTTTCTTGCTTATATGCCTTCAGCAATTATCCCATCTATACATAGCTACCCAG 848804 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| ||| ||||| |||||||||| | |||||| |||||||||||||| Sbjct 848803 CGATGCTATTGGCATAACAGCTGGTACACCAGAGGTATATCCATCTCGGTCCTCTCGTAC 848744 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| || ||||||||||||| | |||||| | ||||| ||||||||||||| | Sbjct 848743 TAGAGTCAGATCTTCTCAAATTTCCTTCACCCACGGCAGATAGAAACCGAACTGTCTCAC 848684 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||||||| || |||||| ||||||||||| |||||||||||| Sbjct 848683 GACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 848624 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||||||||||||||| || ||| |||||||| Sbjct 848623 TGCTTCAGCCCCAGGATGTGATGAGTCGACATCG 848590 >seq2301 Length=88450 Score = 178 bits (196), Expect = 2e-42 Identities = 124/141 (88%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| ||||| |||| | | |||||||||||||||||||||| ||||||||| |||| Sbjct 581 TCTCAAGTTTCCGACGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTCTAAACC 640 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||||||| || |||||| ||||||||||| ||||||||||||| ||||||||||| Sbjct 641 CAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTGCTTCAGCCCCA 700 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||| Sbjct 701 GGATGTGATGAGCCGACATCG 721 Score = 154 bits (170), Expect = 2e-35 Identities = 117/138 (85%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| |||||||||| |||||| ||||| | ||| ||| ||||| ||||| ||| Sbjct 393 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCACGTCCGAACGTAGCTAACCAGCGGTGCC 452 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 |||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct 453 CTTGGCAGGACAACTGGCACACCAGAGGTTCGTCCATCCCGGTCCTCTCGTACTAGGGAC 512 Query 129 AGCTCCTCTCAAATTTCC 146 ||||| |||||| ||||| Sbjct 513 AGCTCTTCTCAAGTTTCC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780335797320