Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq29993 107 3e-21 seq7047 104 4e-20 >seq29993 Length=1368 Score = 107 bits (118), Expect = 3e-21 Identities = 108/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 89 GAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTT 148 |||| | || | |||||| || | | ||| | | ||| ||| || ||||||||| | Sbjct 360 GAGCGCGGCGATGAAGGCCTCCTGGGGGACCT-CGACGCGGCCGACCACCTTCATGCGCT 302 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || |||| |||||||| |||||||||||||| ||||| | |||||||||||||| Sbjct 301 TCTTGCCCTCCTTCTGCTTCTCGAGCAGCTTGCGCTTGCGGCTGATGTCACCGCCGTAGC 242 Query 209 ATTTGGCCAGTACGTTCTT 227 ||||||| || |||| ||| Sbjct 241 ATTTGGCGAGCACGTCCTT 223 >seq7047 Length=22334 Score = 104 bits (114), Expect = 4e-20 Identities = 114/151 (75%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 138 CTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTC 197 ||||||||| || ||||| |||| |||||||| || ||||||||||| || || | ||| Sbjct 21384 CTTCATGCGCTTCTTACCCTCCTTCTGCTTCTCGAGGAGCTTGCGCTTCCGACTGATGTC 21443 Query 198 ACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGC--- 254 |||||||||||| |||||||| |||| ||| | || ||| |||| || | ||| Sbjct 21444 ACCGCCGTAGCACTTGGCCAGCACGTCCTTGCGGATGGCC----CGGATGTTCTCGCGGG 21499 Query 255 -AATGATCTGCCCGCCAATGGCGGCCTGGAT 284 ||||||| || ||||| |||||||| Sbjct 21500 AGATGATCTTGGACCCGATGGCCGCCTGGAT 21530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 837885473920