Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq811 327 3e-87 seq2773 244 3e-62 seq2301 226 7e-57 >seq811 Length=1020237 Score = 327 bits (362), Expect = 3e-87 Identities = 324/414 (78%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||||||| || ||| |||||||| ||||||||| ||||||| Sbjct 710593 CTTTACAACCCAAAGGCCTTCTTCACTCATGCGACATGGCTGGATCAGGCTTTCGCCCAT 710534 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 710533 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGACCGTATCTCAGTTCCAGTG 710474 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||||||||||||||||| |||||| |||| | |||| ||| ||| ||||| || || Sbjct 710473 TGGCTGGTCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTATTACTCCACC 710414 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||||| |||| | | || | ||| | | | Sbjct 710413 AACTAGCTAATCTAATATAGGCTCATCTAATAGCAATA------AATTTTTCCCCCGTAG 710360 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| ||| ||||||||| ||||||||| |||| || | | ||| Sbjct 710359 G----GCG----TATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAGGT 710308 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | |||||||||||||||| |||||| || | | |||||||| | Sbjct 710307 AGATTCCTATACATTACTCACCCGTCTGCCACTAAGTTATACTA-TAGCAAGCT--ATAA 710251 Query 363 TGTTA--CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 710250 TATAACTCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCATTCTGAG 710197 >seq2773 Length=113092 Score = 244 bits (270), Expect = 3e-62 Identities = 309/418 (74%), Gaps = 24/418 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 68517 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTGCGCCCATT 68458 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 68457 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 68398 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| |||| |||||||| || |||| ||||||||| ||| |||||||||||| ||| Sbjct 68397 GGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCACCA 68338 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG- 243 || |||| || ||| ||||| | || | | ||| || | | Sbjct 68337 ACAAGCTGATAGGCCGCGGGCCCATCCTGCACCGATAAATC----TTTCCACCACACGGC 68282 Query 244 --GTCTTGCGACGT--TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC--CCTCCA 297 | ||| || ||| ||||||||| | | |||||| | | ||||||| | || Sbjct 68281 ATGCACCGCGCAGTCCTATCCGGTATTAGACCCAGTTTCCCGGGCTTATCCCGAAGTGCA 68222 Query 298 TCAGGCAG-TTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT 356 ||||| | |||| |||||||||||| |||||||||| | | | ||| Sbjct 68221 --GGGCAGATCACCCACGTGTTACTCACCCGTTCGCCACTCGT----GTACCCCGAAG-G 68169 Query 357 GCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||||||||||||||||||||||| || ||||||||||||| ||||| Sbjct 68168 GC-----CTTACCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGAG 68116 >seq2301 Length=88450 Score = 226 bits (250), Expect = 7e-57 Identities = 164/190 (86%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 4917 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTTCGCCCATT 4976 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 4977 GTGCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 5036 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| ||||||||| |||| |||| |||| | ||| Sbjct 5037 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCACTACCTCACCA 5096 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 5097 ACAAGCTGAT 5106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221649813120