Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2773 387 4e-105 seq2301 376 7e-102 seq811 349 1e-93 >seq2773 Length=113092 Score = 387 bits (428), Expect = 4e-105 Identities = 299/354 (84%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 |||| |||||| | |||||| | || |||| |||||| ||||| ||| |||||||||| Sbjct 68304 CGGTGCAGGATGGGCCCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCG 68363 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 |||| ||||||| |||||||||| || |||||||| ||| |||||||||||| ||| | Sbjct 68364 ACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGA 68423 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 68424 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCGAC 68483 Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-----TA 378 |||||||||| ||||| ||||||||||| ||||| |||| || || ||| || | Sbjct 68484 GCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGTGA 68543 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 ||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 68544 GTGACGGTACCTGCAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGT 68603 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||| || |||||| |||||||||||| |||||||||| | |||||| ||||| Sbjct 68604 AGGGTGCAAGCGTTGTCCGGAATTACT-GGGCGTAAAGAGCTCGTAGGCGGTTT 68656 >seq2301 Length=88450 Score = 376 bits (416), Expect = 7e-102 Identities = 377/486 (78%), Gaps = 10/486 (2%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||| ||||||||||||| |||| |||||||||||| || | ||||||| | Sbjct 5251 AGTGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCTCCACTCTGGGATAACTCCGGG 5192 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATG-GTAGAAGTATCAAAGCTCC 141 ||| | |||||||| |||| | | | | ||||| || | | |||| | Sbjct 5191 AAACGGGAGCTAATACTGGATATGACTCGTGCGT-GCATGCGTTGCGGGTGGAAAGTTTT 5133 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 |||| |||| | | |||| | || |||| |||||| ||||| |||| ||||||| Sbjct 5132 TTCGGTGGGGGATGGGCTCGCGGCCTATCAGCTTGTTGGTGAGGTAGTGGCTCACCAAGG 5073 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 |||||| ||||||| ||||||||||||| |||||||| ||| |||||||||||| ||| Sbjct 5072 CGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGCCCA 5013 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 5012 GACTCCTACGGGAGGCAGCAGTAGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCG 4953 Query 322 ACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA----- 376 |||||||||||| ||||| ||||||||||| ||||| |||| || | ||||| Sbjct 4952 ACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCTTTGAAGAAGCCT 4893 Query 377 --TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 |||||||| | || ||||| |||||||||||||||||||||||||||||||| Sbjct 4892 TCGGGTGACGGTAGGAGCAGAAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 4833 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCT 494 |||||||| || |||||| |||||||||| | |||||||||| | ||||| ||||| | Sbjct 4832 ACGTAGGGTGCGAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTTGTAGGCGGTTTGT 4774 Query 495 TAAGTC 500 | ||| Sbjct 4773 CACGTC 4768 >seq811 Length=1020237 Score = 349 bits (386), Expect = 1e-93 Identities = 278/333 (83%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| |||| || ||||||||| | |||| |||| || ||||||| Sbjct 710402 GATTAGCTAGTTGGTGGAGTAATAGCCTACCAAGGCAATGATCTATAGCTGATCTGAGAG 710461 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||| | |||||| ||||||||||| |||||||| ||| |||||||||||||||||||| Sbjct 710462 GATGACCAGCCACACTGGAACTGAGATACGGTCCAGACTTCTACGGGAGGCAGCAGTGGG 710521 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||| ||||||||| |||||||||| |||| | | ||| |||| || ||||||||| Sbjct 710522 GAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGTCGCATGAGTGAAGAAGGCCTT 710581 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 |||| |||||||||| | |||||||||||||||||||| || |||| || || Sbjct 710582 TGGGTTGTAAAGCTCTTTTAGTGAGGAAGATAATGACGGTACTCACAGAAGAAGTCCTGG 710641 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||||||| || ||||||||||||| |||||||| | Sbjct 710642 CTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGAGGGCTAGCGTTATTCGGAATTA-TT 710700 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||||||| ||||||| | || ||||| Sbjct 710701 GGGCGTAAAGGGCGCGTAGGCTGATTAATAAGT 710733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496680922880