Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2301 334 2e-89 seq811 320 4e-85 seq2773 315 2e-83 >seq2301 Length=88450 Score = 334 bits (370), Expect = 2e-89 Identities = 318/403 (79%), Gaps = 5/403 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 4873 GAAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTG 4814 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||| ||||||||||| | ||||| ||||| | | ||| | |||||| Sbjct 4813 TCCGGAATTATTGGGCGTAAAGAGCTTGTAGGCGGTTTGTCACGTCTGCTGTGAAAACTC 4754 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 |||| ||| ||| | ||| | | || | | |||||||| | ||||| | || Sbjct 4753 GGGGCTTAACTCCGAGCTTGCAGTGGGTACGGGCAGACTAGAGTGTGGTAGGGGAGACTG 4694 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||||||| ||||||||||| |||||| |||||| |||||||||||| |||||||||| Sbjct 4693 GAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGATGGCGAAGGCA 4634 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | |||| | | |||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 4633 GGTCTCTGGGCCATTACTGACGCTGAGAAGCGAAAGCGTGGGGAGCGAACAGGATTAGAT 4574 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT---AAGTGCT 365 ||||||||||||||||||||||||| || |||||||| ||| | ||| | | | | Sbjct 4573 ACCCTGGTAGTCCACGCCGTAAACGGTGGGCGCTAGGTGT-GGGACTCATTCCACGAGTT 4515 Query 366 CCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || |||||||||| |||||| |||| || ||||||||||| Sbjct 4514 CC-GTGCCGCAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTA 4473 >seq811 Length=1020237 Score = 320 bits (354), Expect = 4e-85 Identities = 272/333 (82%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||| || |||||||| |||||||||||||||||||||||| || |||||||||||| Sbjct 710629 GAAGAAGTCCTGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGAGGGCTAGCGTTA 710688 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||| ||||||||||||| ||||||| | || ||||| | | |||||| | Sbjct 710689 TTCGGAATTATTGGGCGTAAAGGGCGCGTAGGCTGATTAATAAGTTAAAAGTGAAATCCC 710748 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAG--TGCAGGAGGGGCAAG 186 |||| |||| || | ||||||| ||||| |||||| || | |||| || Sbjct 710749 GAGGCTTAACCTTGGAATTGCTTTTAAAACTATTAATCTAGAGATTGAAAGAGGAT--AG 710806 Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||||| ||||| ||| |||| |||| |||||||||||||||||||||||||||| Sbjct 710807 AGGAATTCCTGATGTAGAGGTAAAATTCGTAAATATTAGGAGGAACACCAGTGGCGAAGG 710866 Query 247 CGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAG 306 ||||| || ||| ||||||||| | | |||||||||||||||||||||||||||| Sbjct 710867 CGGCTCACTAGACGAATACTGACACTCAAGTACGAAAGCGTGGGGAGCAAACAGGATTAG 710926 Query 307 ATACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 ||||||||||||||||||| ||||||||||||| Sbjct 710927 ATACCCTGGTAGTCCACGCTGTAAACGATGAAT 710959 >seq2773 Length=113092 Score = 315 bits (348), Expect = 2e-83 Identities = 317/410 (77%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| || || ||||| ||||| |||||||||||||||||||||||||||||||||| || Sbjct 68551 TACCTGCAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 68610 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||||||||||||||||| | |||||| ||||| | ||| || Sbjct 68611 AAGCGTTGTCCGGAATTACTGGGCGTAAAGAGCTCGTAGGCGGTTTGTCGCGTCGTCTGT 68670 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | ||||||| || ||| || || | | || |||| ||| Sbjct 68671 GAAAACCAGCAGCTCAACTGTTGGCTTGCAGGCGATACGGGCAGACTTGAGTATTTCAGG 68730 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||||||| |||||||||||||||||| |||||| |||||||||||| |||| Sbjct 68731 GGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGG 68790 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||||| | |||| |||||||| |||||| |||||||||||| ||| ||||| Sbjct 68791 CGAAGGCGGGTCTCTGGGAAATAACTGACGCTGAGGAGCGAAAGCGTGGGTAGCGAACAG 68850 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-- 358 ||||||||||||||||||||||||||||||||| || |||||||| || | | Sbjct 68851 GATTAGATACCCTGGTAGTCCACGCCGTAAACGGTGGGCGCTAGGTGTGGGTTTCCTTCC 68910 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | ||| |||||| ||| |||||| |||| || ||||||||||| Sbjct 68911 ACGGGATCC-GTGCCGTAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTA 68959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202461596160