Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2773 273 7e-71 seq811 253 7e-65 seq2301 251 2e-64 seq2167 84.2 7e-14 >seq2773 Length=113092 Score = 273 bits (302), Expect = 7e-71 Identities = 363/488 (74%), Gaps = 17/488 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||||||| ||||||| |||||| | | | |||||||| | |||||||||||| Sbjct 70689 CGAGTCCGAATAGGGCGAATTTAGTCGCATGCTCTGGACCCGAAGCGGAGTGATCTACCC 70748 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 70749 ATGGCCAGGGTGAAGCGACGGTAAGACGTCGTGGAGGCCCGAACCCACTTAGGTTGAAAA 70808 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 | |||||||||| |||||||||||||||||||| || |||||| | ||||||||||| Sbjct 70809 CTGAGGGGATGAGTTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGTTC 70868 Query 179 TCTCCGAAAACTATTTAGGT--AGTGCCTCAAGTATCACCATCGGGGGTAGAGC-ACTGT 235 || |||||| |||||||| || | | | || ||| | | || |||||||| |||| Sbjct 70869 TCCCCGAAATGCATTTAGGTGCAGCGTCGCGTGTTTCATCCT-GGAGGTAGAGCTACTG- 70926 Query 236 TATGG-CTAGGGGGTCATTGCGACTTACC-AAACCATTGCAAACTCCGAATGCGCATCA- 292 |||| |||||||| | | |||||| ||| || |||||||||||||| || | Sbjct 70927 GATGGTCTAGGGGGCCCACAAG-CTTACCGAAATCA-GCCAAACTCCGAATGC-CAGGAT 70983 Query 293 GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC 352 || | ||||| |||||| ||| | |||||| ||| ||||||| || | || Sbjct 70984 GTGAGAGCGCGGCAGTGAGACTGCGGGCGATAAGGTTCGTAGTCGAGAGGGAAACAGCCC 71043 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 || | ||||||||||| || | |||||| || || || || | || | Sbjct 71044 AGATCGCCGGCTAAGGCCCCTAAGCGTGTACTAAGTGGAA--AAGGATGTGAAGTCGCGA 71101 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||| | |||| |||||||| |||||||||| | || ||||||||||||| ||||||| Sbjct 71102 AGACAACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCAC 71160 Query 473 TAGTCGAG 480 | ||| || Sbjct 71161 TGGTCAAG 71168 >seq811 Length=1020237 Score = 253 bits (280), Expect = 7e-65 Identities = 333/452 (74%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||||||||||||||||||||| |||| |||| ||||||| ||||| || ||| Sbjct 846870 TAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTATGGTAAAACATACTGA 846929 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| |||||||| || |||| ||||||| |||| |||||||||||||| Sbjct 846930 AGGATCGAACCAGTTAATGTTGCAACATTATTGGATGAGTTGTGATTAGGGGTGAAAGGC 846989 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT--CAAGT 210 || ||||| ||||||||||||||||| ||||| |||||||||||| || | | | Sbjct 846990 CAATCAAACCGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTTGTATTT 847049 Query 211 ATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGG--TCATTGCGACTTACCAAACC 268 || | ||||||||||||||| | |||||||| |||| | ||||||||| | Sbjct 847050 AT-GTTGTTGGGGGTAGAGCACTGGATAGACTAGGGGGATTCAT--CATCTTACCAAATC 847106 Query 269 ATTGCAAACTCCGAATGC---GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAA 325 |||||||||||| | || | || ||| || || | ||||||||||| Sbjct 847107 TAACCAAACTCCGAATACCAATAATTAATTGTACAGC---AGACACACTATGGGTGCTAA 847163 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 ||||||| || ||| || | || || | | |||||| ||| |||| ||||||| Sbjct 847164 -GTCCGTGGTGGAAAGGGAAACAGCCCAGATCACTATCTAAGGTCCCAAAATTACAGCTA 847222 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| | || ||||| | | | |||||||||| ||||||||||||||||||| Sbjct 847223 AGTGGGA--AAGGAAGTAGAAAAACCATTACAGCTAGGAGGTTGGCTTGGAAGCAGCCA- 847279 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||||||| ||||||||||||||| ||| Sbjct 847280 TCCTTTAAAGAAAGCGTAACAGCTCACTTGTC 847311 >seq2301 Length=88450 Score = 251 bits (278), Expect = 2e-64 Identities = 352/484 (73%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||||||| |||||| ||||||||||| |||||||||| | ||||||||| ||| Sbjct 2716 CGAGTCCGAATAGGGCGTATGAGTCGCTGGGTCTAGACCCGAAGCGGAGTGATCTATCCA 2657 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| ||||| || |||||| ||||||||||| | ||| |||| Sbjct 2656 TGGCCAGGTTGAAGCGCGGGTAAGACCGTGTGGAGGACCGAACCCACTTAGGTTAAAAAC 2597 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || |||||| | |||||||||||| Sbjct 2596 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGTTCT 2537 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 | |||||| |||||||| || ||| || | | | ||| |||||||| |||| | Sbjct 2536 CCCCGAAATGCATTTAGGTGCAGCGTCACGTGTTTCTTACCGGAGGTAGAGCTACTG-GA 2478 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTG-CAAACTCCGAATGCGCATCAGTTT 296 | ||| | ||| | | | | | | || | | |||||||||||||| | ||| Sbjct 2477 TAGCT-GAGGGGCCTCACCAGGTTACTGACGTTAGCCAAACTCCGAATGCCGGTAAGTGA 2419 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | || || |||||| ||| | |||| | ||| ||||||| || | || || Sbjct 2418 GAGCGTGGCAGTGAGACTGCGGGGGATAAGCTTCGTAGTCGAGAGGGAAACAGCCCAGAT 2359 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | || |||||| ||| || | ||||||| | || || || ||||| ||| Sbjct 2358 CACCAACTAAGGTCCCTAAGCGTGTGCTAAGTGGTA--AAGGATGTGGAGTTGCTGTGAC 2301 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | |||||||||||||||| |||||||| || Sbjct 2300 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACTGGT 2242 Query 477 CGAG 480 | || Sbjct 2241 CAAG 2238 >seq2167 Length=120157 Score = 84.2 bits (92), Expect = 7e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 || ||| ||||||||||||||| |||||||||| ||||||||||| |||||| |||||| Sbjct 64801 AAAACAACTAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCA 64859 Query 472 CTAGTC 477 |||||| Sbjct 64860 CTAGTC 64865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688563092480