Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq811 185 2e-44 seq2301 163 5e-38 seq2773 132 9e-29 >seq811 Length=1020237 Score = 185 bits (204), Expect = 2e-44 Identities = 240/326 (74%), Gaps = 22/326 (7%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||| || |||||||||||||| | | |||||||||||||||| | || ||||||| Sbjct 846224 AGAGCACTTGATGGATGCCTTGGCGTTAAGAGGCGATGAAGGACGTGGCAGGCTGCGATA 846283 Query 61 AGCTGCGGGGA---GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||||| ||| | || ||||| | |||||||||||||||||||||||||||||||| Sbjct 846284 AGCTGTGGGAAATTGTCAGCAA----ATTTTGATCCGCAGATTTCCGAATGGGGAAACCC 846339 Query 118 GGC--CCTTTG--GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAA 173 | ||| | || ||| || ||| || |||| ||||| ||| || ||| Sbjct 846340 AACTAGCTTAGCTAGTTATT--AT-----ATA-TTAAGTATATAAAGCAAACTTGGTGAA 846391 Query 174 CTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGA 233 |||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct 846392 CTGAAATATCTAAGTAGCCAAAGGAAAAGAAATCAACCGAGATTCTGTTAGTAGTGACGA 846451 Query 234 GCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAG 293 |||||| ||| || || | ||| ||| | | |||| |||||||| | | Sbjct 846452 GCGAAAGCGGAAAAGGCT---AGCGATTTAAAAATAAGAATTAGAATACTCTGGAAGTGG 846508 Query 294 GAGCCATAGCGGGTGATAGCCCCGTA 319 | |||||| |||||||| || ||| Sbjct 846509 TAACCATAGAAGGTGATAGTCCTGTA 846534 >seq2301 Length=88450 Score = 163 bits (180), Expect = 5e-38 Identities = 197/265 (74%), Gaps = 20/265 (8%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGG---CGATGAAGGACGTAGTAGCTTGCG 57 || ||||| ||||||||||||||| |||| ||| ||||||||||| | |||| Sbjct 3401 AGGGCACACGGTGGATGCCTTGGCAC---CAGGAACCGAAGAAGGACGTAGGAATCTGCG 3345 Query 58 ATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||||| |||||||| || || || |||||||| ||||||||||||||||||||| Sbjct 3344 ATAAGCCTCGGGGAGTCGATAACCAGACGTTGATCCGAGGATTTCCGAATGGGGAAACCC 3285 Query 118 GGCCCTTTGGGTCAT-TGCA---------TGCTGAATACATA-GGTATGCAAAGCGAACG 166 ||| | ||||| |||| ||||||| ||| || || || ||||| Sbjct 3284 GGC---TGCAGTCATGTGCAGTCACCCGCGCCTGAATATATAGGGCGTGTGGAGGGAACG 3228 Query 167 CGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 || ||| |||||||||| |||| | |||||| ||||| |||||| |||||| |||| Sbjct 3227 TGGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAGCAACCGCGATTCCGTGAGTA 3168 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||| ||||||| || Sbjct 3167 GTGGCGAGCGAAAGCGGATGAGGCT 3143 >seq2773 Length=113092 Score = 132 bits (146), Expect = 9e-29 Identities = 174/238 (73%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| || ||||||||||||||| || |||||||||| |||| Sbjct 69977 GGTGGATGCCTTGGCACCAGGAGCCGATGAAGGACGTAGGAGGCTGCGATAAGCCTCGGG 70036 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG-- 127 ||| ||| | || |||||| | | ||||||||||||||||| || | | Sbjct 70037 GAGCTGTCAACCGAGCTGAGATCCGAGGGTGTCCGAATGGGGAAACCCAGCACGAGTGAT 70096 Query 128 GTCATT------GCATGCTGAATACATAGG-TATGCAAAGCGAACGCGGCGAACTGAAAC 180 ||| | |||| ||||||| ||||| | || || ||||| || ||| |||||| Sbjct 70097 GTCGTGTTACCCGCAT-CTGAATATATAGGGTGTGTGGAGGGAACGTGGGGAAGTGAAAC 70155 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| |||| | |||||| ||||| |||| | |||||| |||||||||||||||| Sbjct 70156 ATCTCAGTACCCACAGGAAGAGAAAACAACAGTGATTCCGTCAGTAGTGGCGAGCGAA 70213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917836377920