Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2773 769 0.0 seq811 280 5e-73 seq2301 264 4e-68 seq2167 132 2e-28 >seq2773 Length=113092 Score = 769 bits (852), Expect = 0.0 Identities = 512/565 (91%), Gaps = 3/565 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 72559 TCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTGCACTCGACACCTGATTGCC 72500 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 72499 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGG-CAACCGCCCCAG 72441 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTT-AGATATCCA 179 |||||||||||||||||||||||||| | ||||||||||| || ||||| || |||||| Sbjct 72440 TTAAACTACCCACCAGGCACTGTCCCTGAACCAGATCATGGTCCGAGGTTGAGGTATCCA 72381 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 |||| |||||||||||||||||||||||||||||| |||| ||||| || ||| || Sbjct 72380 ATACGATCAGAGTGGTATTTCAACAACGACTCCACACACACTGGCGTGCATGCTTCACAG 72321 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| Sbjct 72320 TCTCCCACCTATCCTACACAAACCGAACCGAACACCAATACCAAGCTGTAGTGAAGGTCC 72261 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| Sbjct 72260 CGGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCG 72201 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || ||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 72200 AGTCTATGGTTGAGACAGCTGAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 72141 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72140 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTA 72081 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 |||| | || || | |||||| || ||| || ||||||||||||||||||||||| Sbjct 72080 AATTCTCAGCTTCGC-CACCACAAGGGTGGCTGACCGGTCCTCTTAACCTTCCAGCACCG 72022 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||||||||||| ||| Sbjct 72021 GGCAGGCGTCAGTCCGTATACATCG 71997 >seq811 Length=1020237 Score = 280 bits (310), Expect = 5e-73 Identities = 398/560 (71%), Gaps = 21/560 (4%) Strand=Plus/Minus Query 5 CTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACC 64 ||||| || |||||||||| || ||| ||| || ||| | | |||||| || ||| Sbjct 848451 CTTGTCAGCCTCGCAGTCAGGCAAGCTTATGCCATTGTACTATCAAGCTGATTTCCGACC 848392 Query 65 AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAA 124 || || ||||| | |||||||||||| |||| ||||| | ||||||||||| || Sbjct 848391 AGCTCTAGCTTACCTTCGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAGTCAA 848333 Query 125 ACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACG 184 ||||||||||| || ||||| ||||| ||| || ||||||||| | | | Sbjct 848332 ACTACCCACCATACAATGTCCTAGTTTCAGATAATGAAACATAGTTAGATATTAAAAATG 848273 Query 185 GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 | ||||||| |||| |||||||| || |||||| | ||| ||||||| Sbjct 848272 TAAAAGGTGGTATCTCAAGGTCGACTCCATTACAGCTAGCGCCATAACTTCAAAGTCTCC 848213 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGG 303 |||||||||| |||| | || |||| ||| |||||| ||||| | |||| Sbjct 848212 CACCTATCCTGCACATCACATTTTTAACAGCAATGTAAAGTTATAGTAAAGGTGCACGGG 848153 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||| |||||| ||||| | | | |||||| || | | | ||||||| | | Sbjct 848152 GTCTCTTCGTCTAACCGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAAT 848093 Query 364 TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 || | ||||||| | | | |||||||||||||||||| ||||||||||||||||||| Sbjct 848092 GATGTTGGAGACAGTGGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACA 848033 Query 424 AGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||||||||| || | ||||| |||||||||||||||||||||||| Sbjct 848032 AGGAATTTCGCTACCTTAGGACCGTCAGTGTTACGGCCGCCGTTTACTGGGGCTTCAATT 847973 Query 484 ACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCA 543 || | | | ||| |||| ||||||||||||||||||||| Sbjct 847972 ----------CAGAGCTTG---------CACTCTTCCTATTAACCTTCCAGCACCGGGCA 847932 Query 544 GGCGTCAGTCCGTATACCTC 563 |||||||| || ||||| || Sbjct 847931 GGCGTCAGACCCTATACTTC 847912 >seq2301 Length=88450 Score = 264 bits (292), Expect = 4e-68 Identities = 206/245 (84%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 320 GCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCA 379 ||||| |||||||||||||||||||| ||||||||| ||| | | || |||||||| Sbjct 1183 GCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCGAGTTCGCGGCTGAGACAGTG 1242 Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243 GAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 1302 Query 440 TAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACC 499 |||||||||||||||||||||||||||||||||| |||| | || || | | | Sbjct 1303 TAGGATGGTTATAGTTACCACCGCCGTTTACTGGCGCTTAAGTTCTGAGCTT--CGCCTT 1360 Query 500 ACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATA 559 ||| ||| || |||| |||||| ||||||||||||||||||||||||||||||| Sbjct 1361 ACG------GCTAACCCGTCCCCTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATA 1414 Query 560 CCTCG 564 | ||| Sbjct 1415 CATCG 1419 Score = 199 bits (220), Expect = 1e-48 Identities = 124/132 (94%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 856 TCGACATGTCTGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGAAACCTGATTGCC 915 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 916 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGA-GGCAACCGCCCCAG 974 Query 121 TTAAACTACCCA 132 |||||||||||| Sbjct 975 TTAAACTACCCA 986 >seq2167 Length=120157 Score = 132 bits (146), Expect = 2e-28 Identities = 186/256 (73%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||| ||||| || |||||||||| ||| ||| ||| || ||||| | || ||||| | Sbjct 66105 TCGTCTTGTCAGACTCGCAGTCAGGCTAGCTTATGCCATTGCACTCTAACAGTTGATTTC 66046 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | |||| ||||| |||| | | |||||||||||| | ||||||| | ||||||||| Sbjct 66045 CGACCAACCTGAGCTAACCATCGCACGCCTCCGTTAC--TCTGGGAGG-CGACCGCCCCA 65989 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCC 178 || |||||||||| | ||| |||| | | | ||| || || | ||||||||||| Sbjct 65988 GTCAAACTACCCAGCGTGCATTGTCTCGTATTCTGATTCAAGGATCGCGGTTAGATATCA 65929 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | || ||||||| |||| | ||||||||| || | | ||| ||||| Sbjct 65928 AGAATCAAAAGGGTGGTATCTCAAGGATGACTCCACAGTGGCTTGTGCCAACGCTTCATA 65869 Query 239 GTCTCCCACCTATCCT 254 |||||||||||||||| Sbjct 65868 GTCTCCCACCTATCCT 65853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701355237120