Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2773 178 3e-42 seq811 159 7e-37 seq2301 149 1e-33 >seq2773 Length=113092 Score = 178 bits (196), Expect = 3e-42 Identities = 227/313 (73%), Gaps = 15/313 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| |||| |||| ||||| ||| |||||| || | |||| Sbjct 68591 GGCTGCTGGCACGTAGTTGGCCGGTGCTTCTTCTGCAGGTACCGTCA------CTCACGC 68538 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || ||||| | ||||| |||||||| ||| || || |||||| |||||| Sbjct 68537 --------TTCGTCCCTGCTGAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGC 68487 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || || |||||| ||||||||| |||||||||||||||||| Sbjct 68486 GGCGTCGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 68427 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || | Sbjct 68426 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGT 68367 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||| |||| ||||||| || || | || || | ||| |||||| | || Sbjct 68366 CGTCGCCTTGGTAGGCCATTACCCCACCAACAAGCTGATAGGCCGCGGGCCCATCCTGCA 68307 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 68306 CCGATAAATCTTT 68294 >seq811 Length=1020237 Score = 159 bits (176), Expect = 7e-37 Identities = 156/200 (78%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||| ||||||| || || ||||| || ||| || || ||||||| |||| || Sbjct 710601 TAAAAGAGCTTTACAACCCAAAGG-CCTTCTTCACTCATGCGACATGGCTGGATCAGGCT 710543 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 ||| |||||| |||||||||| |||||||||||||||||| ||| |||||||| ||||| Sbjct 710542 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGACCGTATCTCA 710483 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 |||||| ||||| | | |||||||||| | |||| ||| | | || ||| ||| | Sbjct 710482 GTTCCAGTGTGGCTGGTCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAGGCTAT 710423 Query 260 TACCCCGCCTACTACCTAAT 279 ||| || || |||| ||||| Sbjct 710422 TACTCCACCAACTAGCTAAT 710403 >seq2301 Length=88450 Score = 149 bits (164), Expect = 1e-33 Identities = 222/313 (71%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||| ||| | | ||| | ||| Sbjct 4841 GGCTGCTGGCACGTAGTTAGCCGGTGCTTCTTCT----GCTCCTACCGTCACCC------ 4890 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||||| || ||| | ||||| |||||||| ||| || || |||||| |||||| Sbjct 4891 -GAAGGCTTC-TTCAAAGCTGAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGC 4947 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || ||| |||||| ||||||||| ||||||||||||||||| Sbjct 4948 GGCGTCGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCTACTGCTGCCTCCCGTAG 5007 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || | Sbjct 5008 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 5067 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||| |||| | || || | || || | ||| |||||| || Sbjct 5068 CGTCGCCTTGGTGAGCCACTACCTCACCAACAAGCTGATAGGCCGCGAGCCCATCCCCCA 5127 Query 301 CCGATGAATCTTT 313 |||| || |||| Sbjct 5128 CCGAAAAAACTTT 5140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068144077440