Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq254 134 1e-26 seq907 109 4e-19 >seq254 Length=3229631 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| |||||||| || || || || ||||| ||||| |||||||| || | | Sbjct 2115973 TGTTCAACGCCATCGAAACAATGCCCTGTGTCAAGCGCAAAGCTGATTGGGCATTGCAGT 2115914 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| |||| || || || |||||||| || |||| | || || || | |||||| Sbjct 2115913 GGATCGCCAGCGAGACCGCAACGTTTGGTGAGCGTATTG-TAGCGTTCGCTGCAGTCGAG 2115855 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 ||| | || ||| || || || | ||||| ||| | ||||| ||||| || ||| Sbjct 2115854 GGTATCTTCTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATG 2115795 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||||| || |||||||||||||| |||| ||||| ||||||| Sbjct 2115794 CCCGGACTAACCTTCAGCAATGAACTGATCTCACGTGACGAGG 2115752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || || ||| |||| || || |||||||| ||||||||||| || |||||||| Sbjct 2116307 CAAGAAGTCCAGGTGACGGAAGCTCGGTGTTTCTATGGCTTCCAGATCGCAATGGAGAAC 2116248 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||| || |||||||| | || || || || ||||| Sbjct 2116247 ATCCACTCAGAAATGTACAGCCTGCTGATTGACACCTACAT 2116207 >seq907 Length=523837 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||||||||| || ||||| || || ||||| ||||| || | ||||| || Sbjct 396408 GGTGTACTCGACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCAAGGTTCTGCTG 396349 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| |||||||| ||||| |||||||| || | |||||||||| || ||||| || || Sbjct 396348 ATTGCTCTTGCGGTTGCAGGCATCCTTATATAACATGTACGGAACACCAGTCTCTACCTG 396289 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || || | ||||||| | || |||||||| |||| Sbjct 396288 GGCGTCCAGGATGGCGAAGAACAGTTGGCGTGCCTGCACC 396249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || ||||||||||| || || || || || ||||||||| ||| || || ||| Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGAATAGATGTTACTAGTGTAAGGCTCGAAG 405356 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 || || | ||||| ||||| || || ||||||||||| ||||||||||| | ||||| Sbjct 405355 GACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAAC 405296 Query 65549 GAGTTTCG 65556 |||||||| Sbjct 405295 GAGTTTCG 405288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397270640256800