Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2122 143 8e-30 >seq2122 Length=311902 Score = 143 bits (158), Expect = 8e-30 Identities = 265/385 (69%), Gaps = 8/385 (2%) Strand=Plus/Minus Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576 |||||| ||||| || |||| ||||||| ||| | ||| |||||| || |||||||| Sbjct 152849 CAAATATCCAATAATTTCTATAGAAGATGCAATGAATGAAGACGACTATGAAGGTTGGAA 152790 Query 2577 ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC 2636 || ||||||| | ||||| |||||||||||||||||| || || || || || || Sbjct 152789 ATTACTTACTGTAAAACTTGGGAATAAAGTTCAATTGGTTGGAGATGATTTATTTGTTAC 152730 Query 2637 TAACACTG--CTTACCTTGAAAAAGG--TATTGCAGAACACGCTGCTAACTCAATCCTTA 2692 || || || | | ||||| || | |||| | | || || | | || | Sbjct 152729 AAATTGTGAACTAA--TAAGTAAAGGAATAGAGGAGAAAATG--GCAAATGCTGTACTAA 152674 Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752 |||| ||||| || || || | || |||||||||| ||||| |||||||| ||| Sbjct 152673 TCAAGCCAAACCAGATAGGAACACTTACGGAAACTTTTGCTGCTATTGAAATGGCAAAAT 152614 Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | ||| || | || | | || || || ||||||||||| |||||| |||| || Sbjct 152613 CAAATGGCTATAGGGCTATTATTTCGCATCGCTCAGGTGAAACAGAAGATACAACGATAT 152554 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | | || || |||||| | || ||| ||||| ||||| || || |||| ||| ||| Sbjct 152553 CCCACATAGCGGTTGCATCGAATTGTGGACAAATCAAGACTGGCTCGCTGTCGCGTTCTG 152494 Query 2873 ACCGTATTGCTAAATACAACCAATT 2897 | | |||| || || || |||| Sbjct 152493 ATAGGCTTGCAAAGTATAATGAATT 152469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155924684090280