Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq11737 134 1e-29 seq1447 134 1e-29 seq10921 102 9e-20 >seq11737 Length=277544 Score = 134 bits (148), Expect = 1e-29 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| ||||| ||||| || Sbjct 218319 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCAATCCAAC 218378 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 |||| | ||||| | |||||| || | || |||| ||| || ||||| || Sbjct 218379 CGCGTTTTTTCAACTTAGCATACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 218438 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| | |||||||| |||||| ||||||||| || | | || || || |||||| Sbjct 218439 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT-GCCCAGTATATCTTAT-AGCATTC 218496 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 218497 GGAGTTTGTCAGGAATTG 218514 >seq1447 Length=1029730 Score = 134 bits (148), Expect = 1e-29 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| ||||| ||||| || Sbjct 758054 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCAATCCAAC 757995 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 |||| | ||||| | |||||| || | || |||| ||| || ||||| || Sbjct 757994 CGCGTTTTTTCAACTTAGCATACATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 757935 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| | |||||||| |||||| ||||||||| || | | || || || |||||| Sbjct 757934 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT-GCCCAGTATATCTTAT-AGCATTC 757877 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 757876 GGAGTTTGTCAGGAATTG 757859 >seq10921 Length=25804 Score = 102 bits (112), Expect = 9e-20 Identities = 140/189 (74%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| |||| || ||||||||| || |||||||| |||||| || |||||| Sbjct 3409 GCACTCTTTAAATGATTG-CTGCTTCCAAGCAAACATCCTGGCTGTCTCGGCAGTCAGAC 3351 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||| || | | ||||| | |||| | | || ||| || || ||||| || Sbjct 3350 TTCCTTTGTTCAACTTAGTATAGATTTGGAGACCTTAGCTGTAGTTCTGGGTTCTTTCCC 3291 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGC-ATGACTGATGCGCATT 179 |||||| | ||||||||| ||||| ||||||||| || |||| || || || |||||| Sbjct 3290 TCTCGGACCCGGACCTTAGCACCCGAGCCCTCACT-GC-CGGCTATATCTTAT-CGCATT 3234 Query 180 CGGAGTTTG 188 ||||||||| Sbjct 3233 CGGAGTTTG 3225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537506256000