Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq11482 302 7e-80 seq5180 86.0 9e-15 seq13199 73.4 6e-11 >seq11482 Length=289922 Score = 302 bits (334), Expect = 7e-80 Identities = 215/240 (90%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | Sbjct 13381 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 13324 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 13323 CTCGTTGAAGATCAATAATTGCAATGATCTATCCCCAGCACGATGAGGTTTCAAAAGATT 13264 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||| |||| || || |||| ||| ||||||||||||||||||||| Sbjct 13263 ACCCGCACCTTCCGGTGAAGG-GAAAG-CTCGCTGACCTCATCAGTGTAGCGCGCGTGCG 13206 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 13205 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGTTAAAA 13146 Score = 129 bits (142), Expect = 9e-28 Identities = 166/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGAC-TCGCGCTTACTAGGAATTT 59 ||||||||| ||||||| || ||| | | || ||||| | | |||||||||||||| Sbjct 3794 GTACAAAGGACAGGGACATAATCAGCACATTCT-GATGAAATAGTGCTTACTAGGAATT- 3737 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGA-AATTTCAAAGAT 118 ||||||||| | || |||||||| | ||||| |||||| || ||||||| | | Sbjct 3736 CCTCGTTGACGGAGAATAATTGCAAGCTCCGATCCCAGTCACGAAGAGAATTTCATGG-T 3678 Query 119 TACCCGGACCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||||| ||| || | | || |||| | |||||||||||||||| Sbjct 3677 TACCCACTTCTGTCGAAGTAGGAAGAAACATTC--TGAACTCTCCAGTGTAGCGCGCGTG 3620 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | ||| | ||||||||||||||||||||||||||||||| Sbjct 3619 CAGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGC 3580 >seq5180 Length=100460 Score = 86.0 bits (94), Expect = 9e-15 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC- 217 || || ||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 66424 CAGCATTGTAGCGCGCGTGCGGCCCAGGGCATCTGAGGGCATCACAGACCTGTTATTGCT 66483 Query 218 CTCA 221 |||| Sbjct 66484 CTCA 66487 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC- 217 || || |||||||||||||||||||| |||||| ||| |||||||||||||||||||| Sbjct 64743 CAGCATTGTAGCGCGCGTGCGGCCCATGACATCTGAGGACATCACAGACCTGTTATTGCT 64802 Query 218 CTCA 221 |||| Sbjct 64803 CTCA 64806 >seq13199 Length=6010 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| ||| |||| ||| ||||| | || | || || ||||||||||||| Sbjct 5825 TTACCCGCTCCTCTCGGAGCAGGC--TAGACCTGCTGTTTCCAGCATTGTAGCGCGCGTG 5882 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CTCA 221 ||||||| ||||| ||||||| ||||||||||||||| |||| Sbjct 5883 CGGCCCAAGGCATCTGAGGGCAT--CAGACCTGTTATTGCTCTCA 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751868870000