Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11482 259 9e-67 >seq11482 Length=289922 Score = 259 bits (286), Expect = 9e-67 Identities = 231/282 (82%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGC-CAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | |||||||| | ||| | ||||||||||| ||| ||||| ||||||| Sbjct 12461 TGCCCTTAATTGGGTGTGT-GTAGAGTTCGGGACTTTTACTGTGAGAAAATCGGAGTGTT 12519 Query 99 CAAAGCAGGCCTTTGCTCGAATACATT--AGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||| | |||| ||| | || ||||||||||||| |||||||| || | Sbjct 12520 CAAAGCAGGCTTATGCTTGAA--CGTTGCAGCATGGAATAATGGAATAGGATCA-CGATC 12576 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||||| | || |||||||||||||||||||| ||||| | | | Sbjct 12577 TTATTTTGTTGGTTTCTAAGGTCGAGATAATGATTAATAGGGATAGTTGGGGGCATTAAT 12636 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||| || Sbjct 12637 ATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATT 12696 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||| ||||||| |||||||||||||||| Sbjct 12697 TGCCAAGGATGTTTTCGTTAATCA-AGAACGAAAGTTAGGGG 12737 Score = 158 bits (174), Expect = 2e-36 Identities = 189/250 (76%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| || |||||||||| |||||||||||| | ||||||||| | || ||| || Sbjct 2896 GCCAGAACGTTTACTTTGAGAAAATTAGAGTGCTAAAAGCAGGCTCTCGCCTATATATAT 2955 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG- 183 | |||||||||||| |||| || | || || ||||| |||||||| ||| | | Sbjct 2956 T-GCATGGAATAATGAAATAAGATCT-CGATTTTATTTCGTTGGTTT-TAGAAATTGAGA 3012 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||| || ||||| || ||| | ||| |||||||||||||||| Sbjct 3013 TAATGATTAATAGGATCAGAGGGGGGCGTACGTACTGTGGTGTGAGAGGTGAAATTCTTG 3072 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| | ||| ||| | ||||| |||||| ||||| |||||||||||||||| | Sbjct 3073 GATCGCCACAGGACGAACAGCAGCGAAGGCGTTCGCCAAGAATGTTTTCATTAATCA-AG 3131 Query 304 AACGAAAGTT 313 |||||||||| Sbjct 3132 AACGAAAGTT 3141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915035264000